NONHSAT120344
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT120344 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2169 nt |
Genomic location |
chr7+:44096392..44101313 |
Exon number |
9 |
Exons |
44096392..44096502,44097381..44097458,44097572..44097591,44097728..44097879,44098031..44098582,44098953..44099048,44099142..44099257,44099647..44099752,44100376..44101313 |
Genome context |
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Sequence |
000001 GATGTGGAGC CTGAGTGCAT CATGGAGAAG GTGGCCAAGG CTTCAGGTGC CAACTACAGC TTTCACAAGG AGAGTGGCCG 000080
000081 CTTCCAGGAC GTGGGACCCC AGGCCCCAGT GGGCTCTGTG TACCAGAAGA CCAATGCCGT GTCTGAGATT AAAAGGGTTG 000160 000161 GTAAAGACAG CTTCTGGGCC AAAGCAGAGa tggtcacact gaggctcggA AGGAGGAGGA GAACCGTCGG CTGGAGGAAA 000240 000241 AGCGGCGGGC CGAGGAGGCA CAGCGGCAGC TGGAGCAGGA GCGCCGGGAG CGTGAGCTGC GTGAGGCTGC ACGCCGGGAG 000320 000321 CAGCGCTATC AGGAGCAGGG TGGCGAGGCC AGCCCCCAGA GGACGTGGGA GCAGCAGCAA GAAGTGGTTT CAAGGAACCG 000400 000401 AAATGAGCAG GTAAGATGGG GGTGCTCTAC TTGTTTGGAC CTGTCCTGGC CACACGCAGA AGTCCCTGAT CTCGGATTGA 000480 000481 GGGCCCAGCC CAGACCTGGG CAGAGGCTGC CCTGCAGTCA GCTGGGGCAG GTTGGAATCT GGGCACCTCA AGAGGTGGCA 000560 000561 GTAGAGAGGA AAGCCAAAGG CGGAAGCGTC GGGCTTGGAC CACACCTGGT CCTGGGGGAG GCCCTGGGAG CCCCTTGGCT 000640 000641 TCTGTGTTTT ACTTCCTTTT TTAACGTTAC TTTTTATTTT TAAATGACTT CTCTCCTGAG AACATGTTTT GCCTCCTGGC 000720 000721 CCCACACTCA CCTTTGAGGG GCTACTGGGC CGACAGCTGG AGGGGCTGTG ATCTGGGGAG AGGTGGTGAA GGTTTTGCCC 000800 000801 ACTGCAGGGG TCAACATGTG CTTCCCTCCA GGAGTCTGCC GTGCACCCGA GGGAGATTTT CAAGCAGAAG GAGAGGGCCA 000880 000881 TGTCCACCAC CTCCATCTCC AGTCCTCAGC CTGGCAAGCT GAGGAGCCCC TTCCTGCAGA AGCAGCTCAC CCAACCAGAG 000960 000961 ACCCACTTTG GCAGAGAGCC AGCTGCTGCC ATCTCAAGGC CCAGGGCAGA TCTCCCTGCT GAGGAGCCGG CGCCCAGCAC 001040 001041 TCCTCCATGT CTGGTGCAGG CAGAAGAGGA GGCTGTGTAT GAGGAACCTC CAGAGCAGGA GACCTTCTAC GAGCAGCCCC 001120 001121 CACTGGTGCA GCAGCAAGGT GCTGGCTCTG AGCACATTGA CCACCACATT CAGGGCCAGG GGCTCAGTGG GCAAGGGCTC 001200 001201 TGTGCCCGTG CCCTGTACGA CTACCAGGCA GCCGACGACA CAGAGATCTC CTTTGACCCC GAGAACCTCA TCACGGGCAT 001280 001281 CGAGGTGATC GACGAAGGCT GGTGGCGTGG CTATGGGCCG GATGGCCATT TTGGCATGTT CCCTGCCAAC TACGTGGAGC 001360 001361 TCATTGAGTG AGGCTGAGGG CACATCTTGC CCTTCCCCTC TCAGACATGG CTTCCTTATT GCTGGAAGAG GAGGCCTGGG 001440 001441 AGTTGACATT CAGCACTCTT CCAGGAATAG GACCCCCAGT GAGGATGAGG CCTCAGGGCT CCCTCCGGCT TGGCAGACTC 001520 001521 AGCCTGTCAC CCCAAATGCA GCAATGGCCT GGTGATTCCC ACACATCCTT CCTGCATCCC CCGACCCTCC CAGACAGCTT 001600 001601 GGCTCTTGCC CCTGACAGGA TACTGAGCCA AGCCCTGCCT GTGGCCAAGC CCTGAGTGGC CACTGCCAAG CTGCGGGGAA 001680 001681 GGGTCCTGAG CAGGGGCATC TGGGAGGCTC TGGCTGCCTT CTGCATTTAT TTGCCTTTTT TCTTTTTCTC TTGCTTCTAA 001760 001761 GGGGTGGTGG CCACCACTGT TTAGAATGAC CCTTGGGAAC AGTGAACGTA GAGAATTGTT TTTAGCAGAG TTTGTGACCA 001840 001841 AAGTCAGAGT GGATCATGGT GGTTTGGCAG CAGGGAATTT GTCTTGTTGG AGCCTGCTCT GTGCTCCCCA CTCCATTTCT 001920 001921 CTGTCCCTCT GCCTGGGCTA TGGGAAGTGG GGATGCAGAT GGCCAAGCTC CCACCCTGGG TATTCAAAAA CGGCAGACAC 002000 002001 AACATGTTCC TCCACGCGGC TCACTCGATG CCTGCAGGCC CCAGTGTGTG CCTCAACTGA TTCTGACTTC AGGAAAAGTA 002080 002081 ACACAGAGTG GCCTTGGCCT GTTGTCTTCC CCTATTTTCT GTCCCAGCTC ATCCGTGTCT CTGAAGAACA AATATGCTTT 002160 002161 TGGACCACG |
Predicted Small Protein
Name | NONHSAT120344_smProtein_1406:1654 |
Length | 83 |
Molecular weight | 8951.2731 |
Aromaticity | 0.0487804878049 |
Instability index | 58.3036585366 |
Isoelectric point | 6.01947021484 |
Runs | 9 |
Runs residual | 0.0261456023651 |
Runs probability | 0.0438575830733 |
Amino acid sequence | MASLLLEEEAWELTFSTLPGIGPPVRMRPQGSLRLGRLSLSPQMQQWPGDSHTSFLHPPT LPDSLALAPDRILSQALPVAKP |
Secondary structure | LLLHHHHHHHHHHHHHLLLLLLLLLLLLLLLLEEELLLLLLLLLLLLLLLLLLLLLLLLL LLLHHHLLLLHHHHHLLLLLLL |
PRMN | - |
PiMo | - |