NONHSAT120415
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT120415 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3110 nt |
Genomic location |
chr7-:45022622..45026236 |
Exon number |
2 |
Exons |
45022622..45022921,45023421..45026236 |
Genome context |
|
Sequence |
000001 AGACCTGTAC TCCGTACTCC GTACTTCGTA GTCGCAGCGG CGCGGTCTTC GGCAGTCTAG TCATCCACCG CCATCCTGGG 000080
000081 CCCCACGTGT TGCCTGACCA TTCCTGAGCC CAGGTAGGGG TCCTGGGGGA TTGGGTTCAG TGGCGGGCGG CGTGGGAGGC 000160 000161 TGGGCCGCAG TGAGTGGGGG CACCAGTGAT TCTTGGAGAC CAAGCCTTCA CTACACGTGC TACTTCCTCT CAAGAGGCGG 000240 000241 TTGAGCGCGT TCGGAACATT TTACCCGGAG GAGACTCGGG GATTACTTGA TGAGTAACCT CGTGCTTCTC TTTCAGCCGA 000320 000321 GAAGTGGGGC TTCTGCATGA CCTGGGTGGA CCCCAGTAGG TGGGATGGGA CGTGTGGTCA GGAGGGACCT CACCGGAAGG 000400 000401 CATGGGGTGG CGTGTAGACC TGCCGCAAGA GAGGCTGTAG AGTGGGCCAG GCGTTGCAAG GAGCTAGAGC TGGATAATGG 000480 000481 TTCAGAGGCA CAAGCTGAAG CTAACTGCGT TTGGAGCTAA CTGCATTTGT TCCCTTCTAG GTGGGAGCCG TGGCTGAGGT 000560 000561 GACGGTCTCA AAGTGGAAGA GCTTACTGTC ACAGCAACTC CTTTGCAAGA TGCCCCGGTA AATCACGTTG CAGAGACCCC 000640 000641 AACTCTGCCT TCCTGGAACT AGGCCTGCGT TTTCTCTGAA CCATTATTTC ATGGGGAAAA TGAAATCTAC TTCATGTGCC 000720 000721 TGGTCTACTT ACTCCTTCAG AAGTGATTTC TGAGCCGTAA GATACATGAG AAAAAAATGA AGGGGAAAAG GCAGTATTTA 000800 000801 TATTAACTAC ATGATGATAA GGATGTTTCT GGTCACAGTG AAAAGCCATG CTAGAATTGT AGTGTCATAG AATAATGTGG 000880 000881 AAGTTTAGTT CGTGTTGTCT GATCTATTTA ATAATTTAAT AAGGTTATCT CTTCCAAGAC ACCTTCCCTT CTTCCTCAGC 000960 000961 CAGAAAGGAT CTTTCCCTGA GAGTCATTAG TAGCTCTGGG CTCCTGGAAC CAAGCTCAGG TGCCTAATTG AACTCTGGTC 001040 001041 TCTTCCCACA GCCCCCAGCA GGGACTGGTG CTTAGTGAGA GTGGACTGCC AGATTCCTTG AGTGTGGGGG ATTTGGGTGA 001120 001121 ATGAGGGTAG CAAGCCTCCA GCGTGCTTGG GTCTGCGGTG ACCCTATGCA TTCCTTCAGT GCTTGCTAGA ACAGTTTTGA 001200 001201 AACGGTTTGA GGCCTTGCCC TGCTCCATCC AGAGCAAGGT TATAGAAATT TCAGACAATG ACTTCCTCCC TCCTGGATCT 001280 001281 AGTGTCCTGG GCCTTGTATA GATCCGTGCC ATCTAATGTG GTAGCCACTT GGCACACATG ATTAAATTAA ATTTGGAGTT 001360 001361 TTATTTCATT TTCACACTAG CCACATTTCA GATGATCAGT AGCCACAGGT GGCCAGTGGC TACCATATTG GACCGCACAG 001440 001441 ATTAGAGGGC ATTTCTGTCG CTGTGGAAGT TGTTTTGGAC AATGCTGGTG TGAAAGGTGA AGGGAATCCT GAGTGTTTGC 001520 001521 TGTGCTCCAG GCTCAGTACA AATTTTATTT TATTATACAC TTAAAGCAAA AGTCTTATAA AAGTTGAGGA TGAAGCCAAG 001600 001601 AGTGGTGGTA AGGGTAGGAG TTGAAACAGT GAAGAGGAAT AACAGGGAAG AGTCCTGCCC TGAGAGACTC ATGGAATAGG 001680 001681 ATATTTACAA GGCAAAGCAA AGAGAACCAA AGTCTCAGTT CTGCAGAGGA GCTGAGTGCC CCAGGAGCTA GTGGAGGGTG 001760 001761 AGGTCAATGT GTGCTCATCT TAAAGGAAAA ACTCATGGAA GAGGAAGGTG CTAATGTTGA ACACCTATTT TGCGCCAGAC 001840 001841 CTCTTAATTG TTTTAAATCT TTGAGGTATC ATCATGAGGT CGTTTTTAAG TTCAGTACAG ATGAGGGGCC CAAGGTCAGA 001920 001921 ATTATGTGTC CAGGGTTGCC CAGCCACAAA CCAGCAGATC AGGGTTTGAT GCCAGGCCTC TCTAACCCTG CATCCTGAGT 002000 002001 GGAATATAGA AGCCGGTGGG AAGTTTGGAT GGGAAGGAGA TGGATGCCTT CAAGTTCTTG TCTTGGTGTT AGGTGTGTTA 002080 002081 AAGGACTGGC TGGGATGAGA AGAGTGTTGC TGGCTTGAGC ATAGCACGAG CAGCACAGCT CCTGTGTTCC TCTGGGTGGT 002160 002161 GGGGTCACCT CTCTTAAAGG TAGAGGCTTT CAGCTGATTC TGTCTTTTCA GGCCAGGAAT AGTTGCTGAA CACCCCAGGC 002240 002241 CTGCTGAGGT CCCTCCTTGA GTCTCATGTT CAAGCAGTCT TGTGAGTAAA GCACTGGCTA CCCCTTTTCA CTTACTATCT 002320 002321 TTTCAAGCAT GTTCTACCAC CTTGGAAGGT AAGAGGTTAG TACCTTCTTC CAGAGCAGAG GGCAGGCATT CTTGCTGTGC 002400 002401 GTTGTGAAAG GGTAGAGTCC TGCGCTCCTT TCTTGTAGTA GTCCAATGGC TCATGCAGGT GCCTCTGACT CCCCTATGGG 002480 002481 AACTGGGGCT TGGGAGGGTG GTGGAAAATG CTGATGCTCT GGCTATTGCT ATTGTTTTGA ATAATCAGTG GTCCCTTGTC 002560 002561 CCTAATCGAG GAATTTTGTA TTTTCTACCA GTGTCCATGA AACTGGGAGG CGACCGTGTT AGCTGCCAGT TCCTGACAGC 002640 002641 CACCTCTCAC CAGTGGCTTC ACTCTGTGTC CCTGACCCAG CACATGGCAC AAGAGTGCCT GCCATCCGTC AGTGTTTCTA 002720 002721 CAGCAGCAAT CCCAAGATGC TGGAGCTAGA GGGGACCTGA CCTGAGAGAA GATACCTTCA GTGGCTGCCA GGCTGTTCCT 002800 002801 TGGAACCTGT GCAGGGATGA GGCCTGCCTG TGTTAATACA CCTAGTGAGG AGTGGAGCTG AATTTGAATG CAAGCCTTGG 002880 002881 CACCTTAATT GAGCAAGTTT GAAACCTCGC TTGTTGCCCT TCTGGAAGGA GTCAGGAATT TCCAGTTCTG GGCCTGGGCT 002960 002961 GTGGGTCTGG CAGACAGACC TCTGGCCCTA GGTTTGGGTG CCAGGTTCTC TGCTTCCAGA ATGAGAAGCT TTGCTGTGCA 003040 003041 CCAGGACCTG GGCCCTTCTG GTATCTCCTG AATGAAAAAC AAGGGATATT TAATAAATAT GGATTTAAAT |
Predicted Small Protein
Name | NONHSAT120415_smProtein_1337:1444 |
Length | 36 |
Molecular weight | 4219.9222 |
Aromaticity | 0.171428571429 |
Instability index | 48.4231428571 |
Isoelectric point | 6.52020263672 |
Runs | 7 |
Runs residual | 0.0188861985472 |
Runs probability | 0.012012012012 |
Amino acid sequence | MIKLNLEFYFIFTLATFQMISSHRWPVATILDRTD |
Secondary structure | LEEELHHHHHHHHHHHHHHHHHLLLLLLEEEELLL |
PRMN | - |
PiMo | - |