NONHSAT120479

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT120479

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1199 nt

Genomic location

chr7+:45980028..45998250

Exon number

2

Exons

45980028..45981147,45998172..45998250

Genome context

Sequence
000001 tggccacccg ggccagcagc agcaacctgc tcaggtcccc ttccatggtg tggaagcttt gttctttcgc tgttcacaat 000080
000081 gaatcttgct gctgctcact ctttgggtcc gcactagctt tatgagctgt aacgctcact gcgaaggtct gtggcttcac 000160
000161 tcctgaagtc agcaagacca cgaacccacc ggaaggagga aacaactccg gaagcaccac gtttaagagc tgtaacactc 000240
000241 actgcgaaag tctgcagctt cactcctgaa gtcagcaaga ccacaaaccc accggaagga agaaattcca gacacatcta 000320
000321 aacattggaa ggaacaaact ccagacacac tatctttaag aactgtaaca ctcaccgcga gggtctgtgg cttcatgctt 000400
000401 gaagtcagcc ggaccaagaa cccaccggaa agaaccaatt cctgacacaA TCGTATGTAA AATTTTACTT CCTGATGTGG 000480
000481 GAGTTCATGA AAATGAATTT AAACCTAATT TTAATTATGC TTATATTCTT ACCCCCTCCT GTTGCCATTC CGTCCTATAC 000560
000561 ATGACCCCAA ACCAACAAAC ACTTGAATTG TTTATTTTTA ATTACACCAC GAGGCTACAT TTTTATTGTT TTACAAGGCA 000640
000641 TAGGTAAAAA GCAAGGAGTT GAAGGCAAGT GGACTGGGGC AGGGAGGTGG AACTGGAGCG CACTGCGGTC AGAACCCTGG 000720
000721 GTTGGATGGA GGTTTGGTTT CTGTCTCTGC CAGAAGCCGT CTCTCTTAAC CGTGGACAGA tcttgttcct gaatggacgc 000800
000801 tttcagtatt tctttctgaa gtctgatatt tgctatagat tttatttttt tctgtggctg tagataccct ttatctggtt 000880
000881 aataaaatta ttatctatta ctattttgct aagttaaaga aaagcatgac tgttgaaatg tatcacatac ttttctctgc 000960
000961 acctacaaag atgaccaaat gaactcacca ttggtttatt aatgttgtga atgacattga ttttgctcct aatgtttaac 001040
001041 caatctgtgt tcctgATCAT GATCAAACCT GGTCTTTAtt cttcttcccc ttttcgtttt cttgctcctg ctgcttctca 001120
001121 gcttaatgga gcgacccaca tggtgagaaa ctgaggcctc ttggcaacag ctatgtcact aaaccaactt ggaagtggg
[back to top]

Predicted Small Protein

Name NONHSAT120479_smProtein_1010:1153
Length 48
Molecular weight 5241.2666
Aromaticity 0.106382978723
Instability index 49.1638297872
Isoelectric point 11.0001831055
Runs 6
Runs residual 0.0386170212766
Runs probability 0.051698757581
Amino acid sequence MTLILLLMFNQSVFLIMIKPGLYSSSPFRFLAPAASQLNGATHMVRN
Secondary structure LHHHHHHHHHHHHHHEEELLLLLLLLHHHHHHHHHHHHLLLLLLLLL
PRMN LLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLL
PiMo i??????????????????????????????????????????????