NONHSAT120694

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT120694

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2818 nt

Genomic location

chr7+:55804472..55807289

Exon number

1

Exons

55804472..55807289

Genome context

Sequence
000001 ATGTACTTGG CCCACAGGCC CCTGATGTCT GCGTCCAGCG AGGCGTCCGG TGGCGTCAGC ATGTTTGTGT GGAGGAATGT 000080
000081 GGAACCTTGT TCTGTGGCTG TGTTCTCCTG GTACTCTGTC CCCTTCCTGA CCCCTCCCTG CAGCCGCGTG AGGCCCAGCA 000160
000161 ACCTGCCAGT CACTCAGTGG CCTCCAACCA GAGCAAAGAA CCTGCCAAGT TGGCAGCTGT TGCTCACGAG TGTCCACCAG 000240
000241 GTGGGACAGG GAGTGCTGAC CCTGGGCGGC CCCCTGAAGC CACCTGCCCT GAAAGCCCAG GGCCCAGAAC CCCACACACT 000320
000321 TTGGGGGTGG TGGAACCTGG TAAAAGCCCA CCTCCTACCA TGGAGGAGGA GCCCTGGGCC CCTCAGGGGA GTCCCTGCTG 000400
000401 GACAGTGAGA CAGAGAATGA CCACAATGTT GCTTTCCTCT CTGTCATGTC TCCTGACACC CAGTTGCCTC CACCACTCAG 000480
000481 ATGATGTCAG GCCCAGTCCC TCAGTGCACT GCGCAAGGAA CAGGACTCAT CTTCTGAGAA GGATGGACGC AGCCCCAACA 000560
000561 AATGGGACAA GGACCATATC CGGTGGCCCA TGAGTGGCGT TCATGATCTT CAGCAAGCGG CACTAGGCCC TGGCAGGGCG 000640
000641 CACCAGGGTC ACCCCAACCA GGATAACCGG ACCGTCAGCC AGATCCTGAG CGAGCGGTGG TACACCCTGG GGCCCAATGA 000720
000721 GATGCAGAAG TACCAGACCT GGCCTTCCAG GTGAAGGTGG CCCACTTGCA ACAAGGACCG AAAGAAGTCC AGCTCAGAGG 000800
000801 CCAAGCCCAC AAGCCAGGGG CTAGCAGGAG TGTACAAGGG CTCATGGGAG CAGAGCATAT CAGAGACGGG CACTGCCACT 000880
000881 GCCCCTGGGG TGTCCTCTGA ACGCCTGTCA GTTGTGGCCC AGACATTCCA GAGCTCGGAT ACCAAGGAGC AGCTTCTGTG 000960
000961 GGGCAGGACG GCTGCACACA GTCAGGGAAC CTGGCTCAGC CTGGCCCAAG CCTTCTCCCA CAGCGGGGTA CTCAGCCTGG 001040
001041 ACGGCAGGGA AATAGACCGT CAGGCACTAC AGGAACTGAC ACAGGTGGTG TCTGGCACTG CATCATACTC TGGCCCAAAG 001120
001121 CCTTCTACTC AGCATGGAGC TCCAGGCCAC TTTGCAGCCC CTGGTGAGGG AGGTGACCAG TGGGCAGCCC TGCTGCTGCC 001200
001201 CACCTGAGCT GCTCATTCCC AGCACATGGC CAGTGAGGAC ACAGCGAGTG ACGAGGAGCC CATGGTCATC CATGAGGAGG 001280
001281 AGGGGGTGAT GATGTCATTG CTGATGACGG CTTTAGCACC ACTGACACTG ATCTCAAGTT CAAGGAGTGG GTGACCGACT 001360
001361 GAGAGTGGGG ACGACTCTGG GGAGGAGCCA GAGGGCAACA AGGGCTTTGG TGGGAAGGTA TTGGCACCTG TCATTCCTTC 001440
001441 TTCCTTTACT CCTGCCACCC CTTGCTCGAT CCTGAGCCCC CAGGGTCCCC CGATCCACCT GCAGTTTTTG GCAAAGTCTA 001520
001521 TGGTCCCACC CCGTCCTCCT CCTACACACT CCTATGCTTC CTCCTCAACC TTGGCACCCA CCTCCTTACT GGGCCCAGGA 001600
001601 GCCTTCAAAG CCCAGGAATC TGGTCAGGGC AGCAGAGCGG GCCCCCTATG GCCCCTACCC CTGGGGATGG GGGCCCAGGG 001680
001681 ATGCCTTCCA AGGCGACCTG TTTCCTCCCA ATGGATCCTG CCACCTTCTG GTGCAAGAGA CCTGAAAGTG TGGGCGACCT 001760
001761 GGAGCTACCA GGCCCCTCAG TCATCACGGT CCCTCCCAAC ACTAAGGCTT TCCTAGGCAG GAGCTGGGCT GAGCCACCCG 001840
001841 GGGGGCAGAG CCTGAAGAGG AGAAACTGAC TGGGCTTTGG GGGTCGGGGC AGAGGGAACC CCACGGACAT GGATCCCGCA 001920
001921 CTGGAGGACC CCACCACGCT CAAATGCAAG ATGAGAAGAT GCTCCAGCTG CAGCCCAAAG CCCAACACCC CCAAGTGTGC 002000
002001 CATGTGTGAT GGGGACAGCT TCCCCTTTGC CTGTACAGGT GGGAGAAGCC GAGGACGGGC TCAGGGAACC GGAGACCGAG 002080
002081 AAGGCGGTGT CCTCTTCACT GCACGTGCCC TGGACCAGTG CCGGCCCTGA TCATGCAGCT CTTCCAGGCC CACTGCTTCT 002160
002161 TCCTGTCCAC TAGGCCACAG CCGCCCTCCA GGCCCACTAT GCACACATCC TCCCCTCCAA GGTTTCTTCT GCCCCTGCCC 002240
002241 TGACTCCCAG CCCTGTGGGG GTCCTGACCC CACCTCACCT GGCTAGACTC TGACGCTGCC CTGGCTGCCC CACCACTGCC 002320
002321 TCTGCCCAAG AGTCACGTGA GGCTGAGAGT AGGGGCAGGG GCAGCAGTGG TGCCAGTTGG GGGGCGGTCC AGTGGGAGGA 002400
002401 GCCTCAGCCT CGGGGGCTGC TCCGTGGGAC TGATGACTGC ATGATCTTCT GGGCACCTCA CGGATCTTCA ACTGCAGGTG 002480
002481 AAACGGATGC TGGTGGTGGG TGCAGGGCCG CTGGGAGCCG CTGCATGGGT CCCAGAGGCT GGACTGCGGC AGGTGCCAAC 002560
002561 TGAAGCTGCT GGGGAAGCAT GAGCAGGATG TTCTGCACAC AAACCTTGGA GAAGACGTGT GCATAGCGGG TCCACTGCTG 002640
002641 CTGCccctgc cctgactccc agccctgtct gaccccacct caccctgctc aggctctggc gcaaccctgg ctgccctgcc 002720
002721 actgcctctg cccCAGAGGT GGGACCTTGA CAGCCTGGCT GGAAGGGGAC ACCCTAGCCC TGCTTCAACA CCTGGGTCCC 002800
002801 TCCATAACTA CCACAGGC
[back to top]

Predicted Small Protein

Name NONHSAT120694_smProtein_359:592
Length 78
Molecular weight 8540.678
Aromaticity 0.025974025974
Instability index 73.8168831169
Isoelectric point 8.54364013672
Runs 7
Runs residual 0.0451722190853
Runs probability 0.0292603527898
Amino acid sequence MEEEPWAPQGSPCWTVRQRMTTMLLSSLSCLLTPSCLHHSDDVRPSPSVHCARNRTHLLR
RMDAAPTNGTRTISGGP
Secondary structure LLLLLLLLLLLLLLLHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLHHHH
HHLLLLLLLLEEELLLL
PRMN -
PiMo -