NONHSAT120819

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT120819

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1375 nt

Genomic location

chr7+:57260401..57261775

Exon number

1

Exons

57260401..57261775

Genome context

Sequence
000001 AATGCTAAAA ATTATTATTA TTCCAATAAT TACACTGCTA CCAATAAAAT GACTCTCTAA AAACTCTATA ATCTGAATCA 000080
000081 ATATGACTAT TCACAGCCTA ATCATCAGCT TCATTGCCCT GTTATTTTTT AATCAATTTA ATGACAATCT ATTCAACTTC 000160
000161 TCATTAACTT TCTCTTCTGA TCTGCTGACA TCACCCCTTC TAATCTTAAC AGCCTGACTA CTACCTCTTA GAATTATAGC 000240
000241 AAGCCAGTAC CACCTCTCCA ATGAGTCACC CCCATGGAAA AAGCTCTATT ATTTCCATAT TGGTTTCCCT ACAATTTTCT 000320
000321 TTAATTATGG AATTGACAGC CACAGAACTA ATTATATTTT ATATTCTCTT TGAAGCTACA CTTATCCCTA CCTTAATTAT 000400
000401 GATCACCCCC TGAGGTAACC AACCAGAACG CCTCAATGCA AGCTCGTATT TCTTATCTTA TACACTAGTG GGATCTCTTC 000480
000481 CCCCTGCTTA CTATACTTAT TTATATACTC AAAATACCTC GGTTCACTGA ACACGATAAT AATAATATTT AACACCCAAG 000560
000561 AACTATTAAT TTCCTGATCC AATAACCTTG TATGATTAAC ATGTATTATG GGTTTTATAG TAAAAATACC CCTACACGGA 000640
000641 CTTCACCTAT GACTTCCTAA AGCCCATGTA CAAGCCCCTA TTGCAGGCTC AATAGTACTT GCAGCAGTTC TCCTAAAACC 000720
000721 AGGCAGCTAT GGCATAATAC GGGTTACCCT TATCCTCAGC CCCCTGACAG AATATACACC TTACCCCTTC CTCATGTTAT 000800
000801 CCTTATGAGG GATAGTTATG ATAAGCTCTA TTTGTCTACG ACAAACTGAT CTAGAATCAC TTATTGCATA TTACTCTGTA 000880
000881 AGTCATACAG CACTTGTTAT TAAGGCTATC CTCATTCAAA CTCCCTGAAG CTTTACCGGT GCAATTACCC TCATAATTGC 000960
000961 CCATGGACTT ACTTCAACCT TACTATTCTG CCTAGCAAAT TCAAACTATG AGTGAATCCA TAGCCGAATC ATATTACTCT 001040
001041 TTTAAGGTCT TCAAACACTA CTCCCACTAA CAGCCTTTTG ATGACTTATA GCAAACCTTA CTAACCTTGC CTTACCCCCC 001120
001121 ACCACTAATC TAATAGGAGA ACTCTTTGTA ATGGTGGCTT CATTCTCCTG ATCAAACATC ATCATTATGC TTATAGGACT 001200
001201 AATATATTAA TCACAGCCCT TTATTCCCTA TACATGCTTA TCACAACACA AGGAACACTT ACATATTACA TTAACAGTAT 001280
001281 TAAACCTTCC TCCACACAAG AAAAGATGCT AATACTTACA CACCTTGCAC CTATTCTCCT ATTATCCCTA AACCCTAAGA 001360
001361 TTATTATAGG TTTTA
[back to top]

Predicted Small Protein

Name NONHSAT120819_smProtein_260:412
Length 51
Molecular weight 5588.7238
Aromaticity 0.08
Instability index 40.6042
Isoelectric point 5.31585693359
Runs 5
Runs residual 0.0646783625731
Runs probability 0.0382264617558
Amino acid sequence MSHPHGKSSIISILVSLQFSLIMELTATELIIFYILFEATLIPTLIMITP
Secondary structure LLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLEEEELL
PRMN LLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLL
PiMo iiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTTToooooooooooo