NONHSAT120823

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT120823

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

5372 nt

Genomic location

chr7-:57283841..57290153

Exon number

4

Exons

57283841..57286512,57286918..57289288,57289731..57290024,57290119..57290153

Genome context

Sequence
000001 GGACAACACC TGCTCCCAGG CAAAAGGAGT TTGTTAAGAC ATTGCATTAA ATAGCAAGAT GGCAGATGAA CATCAGGAAA 000080
000081 GAACATTAGG AACATCCACA GTGTTCCATC CAGGAACCTT CACCATGGAA ACCCTTGTGC TCATGGGCCT GGTCTCAAGA 000160
000161 CACATTCAGC TGTTGGGGAT CAGAGGCCGC ACTCATCGTA GCAGAGAGGC AGGACCAACT GGGAGAGGGT CATTCTGTGA 000240
000241 CACCTACTGC ATCACCGGGC TGTGTGAAGT GACTCAGCTG CCAGAACTCA CACAATATCA TTCTACACCA AAACCTCACG 000320
000321 GGAAAAATCC TCCCCGAccc tcagacttaa acagcagcac tggctcctcc ccagatctcc agctccctga ccctcaaact 000400
000401 ccaactgcag caccagctcc acctgggtct ccagctccat gatcctcaaa ctacaacagc agcaccagct cccccgtgga 000480
000481 tctccagctc aatgactctc agacttggga GGTGGCACTG GCTCCCAACC AAGGCTCcag ctccacaaac ctcaaactag 000560
000561 aacagcagca ccagctactc cctgggtctc cagctccctc aaacttcaac tatagcactg gctcttccct gggGCCACCA 000640
000641 GCTCCACAAC CCTCAACTTA CACGGTGGTA GCACCAGCTC CTCCCCAGGT CTCCAGCTCC ACGACCATCA AACTTGAACT 000720
000721 GCAACACCAG CTCCTCTTCA GCCTCCAGCT CCACAATCCT CCAACAACAA CAGCAACACT GGCTCCTCCC TGAATCTCCA 000800
000801 GCTCAACAAC TCACAGACTT GAGAGGCAGC ACCGGCACCT CCCCAAGGCT CCAGCTCCAT GACCCTCAGA TTTGAACAGT 000880
000881 GGTAGCACCA GCTCCTGTCC AGGTCTCCAG CTTCACTATC CTTAAACTAG AACAGCAGCA CCGCCGCCTC CCTGGGTTTC 000960
000961 CAGCTCCATG ACTCTAAGAC ATGAATGAAA GAACCGGGTC ACCCCAGCAC TCCAACTCCA AGACCCACag atttgaacgg 001040
001041 cagcactggc tcttcccggg atctccagct ccacggccct caaactagat cagcagcacc ggctcctctc tggttctcca 001120
001121 gctccacaat cctcacacat gaacaatagt accagctcct ccttgggtct ccagcttcac taccctcaga ctagaacagc 001200
001201 aacactggtt cctccgtgga cctccagctc tacaaTCCTC AGAAATGAAC AGCAGCAGCA CCGCCTCCTA CCTTTGTCTC 001280
001281 CACTTCCACA ACCCTCAAAC TACAACAGCA GTACCGGCCT CTCCCCAGGT CTCCACATAC ATGACCCTCA AAATAGAATG 001360
001361 GCATCATAGG CTCCCTCCTG GATCTCCAGC TCCCAAACCC TCAAACTTCA ATTGACACAC CAGATCCTCC CCACAGCTAA 001440
001441 ATAGCAGCAC GGGCTCTTCC CCAAAGCTCC AGATCCACGA ACCTCTGACT TAAGTGGCGG TAGCACCGGC TCCTCCCTAG 001520
001521 GTCTCCAGTT CCACGACCCT CAAACTATAC ACCAGCACCA GCTCCTCCCC AGGTCTCAGG CTCCATGACC CTCAGACTTA 001600
001601 AAAAGCCATA GTATGGACTT CTCCCTGGGG CTCCAGCTCT ACAACCCTCA GACATGAACA GCAGCAGCAC CGGCTCCTCG 001680
001681 CCCTGTCTCC ACTTCCACGA CCCTCAAACT ACAACAACAG TACCAGCCTC TCCCCAGGTC TCCAGATCCA CGACCCTCAA 001760
001761 AATAGAATGG CATCACCGGC TCCTCCCTGG GTCTCCAGCT CCCAAACCCT CAAACTTCAA TTGACACACC AGATCCTCCC 001840
001841 CACAGTTAAA CAGCAGCACG GGCTGTTCCC CAAAGCTCCA GATCCATGAC CCTCTGACTT AAATGGCGGT AGCACCGGct 001920
001921 ccttcctagg tctgcagttc catgaccctc aaactacaca gcagcaccgg ctcctcccca ggtctacagc tccacCACCC 002000
002001 TCACACTAGA CACCAAGACT ACCTCCTCCC CACTCTCCAG CTACATGACC CTCAGACTTG AACAGCAGCG GCTCCTCCCT 002080
002081 GTACCTAAAG CCCCATTATG CTCAGACTTG AACAACAGCA ACACCAGCTC CCCCACAGGG CTCCAGCTCG AGGACCCACa 002160
002161 gatttaaaca gcagcaccgg ctcttcctgt gacctccagc tccactaacc tcaaactaga acagcagcat cggctcctcc 002240
002241 ttgggtctcc agcttcacta ccctcaggct agaacagcaa caccggttcc tccctgggtc tccagctcaa tgactctcag 002320
002321 atttgaaacg cagcaccggc tcctcacaaa gtttctggct ccaaggccct caaactataa tagcagcagc tgctgcaccc 002400
002401 tgggtctcca gctccacaac ccTCAAAGTA GAAAAGCAGC CCTGGCTCTT CCCCAGGTCT CCAGCTCCTC GAGTCTGAGG 002480
002481 Gttgtagagc tggagaccca gggaggagtc agtgctgctg ttctagtttg agggtcgtgg atctggagac ccagggtgga 002560
002561 gccggtgctg ctgttctagt gtgaaggtca tggagctgga agaccccgga aggatctgct gctgctgtcc tagtttgaag 002640
002641 gtcatggagc tggagaccca ggaaggagTC ATTTGAACAG CAGCACTGGC CCCTCCCCAG gtctactgct ccacCACCCT 002720
002721 CACACTAGAC ACCAACACTA CCTCCTCCCC GCTCTCCAGC TACACGACCC TCAGACTTGA ACAGCAGCAG TGGCTCCTCC 002800
002801 CTAGATTTCC AGCTCCATGA CCCTCAACCT GCAACCGCAG CACGAGCTCT TCCCTGTACC TCAAGCCCCA TGACCCTCTG 002880
002881 ACTTGAACAA CAGCAACACC AGCCACCCCC AGGTCTCCAG CTCCACAACC CTCAGCCTTA AGCAACAGCA GCACCAGctc 002960
002961 ctccctgggt ctccagattc acacccctca gattagaaca gcacccctcc tctctgagtc tccagctcca tgaccctcaa 003040
003041 actacaacag caacacgggc tcctccctgc atctccagct caacaaCTCT CAGACTTGAG AGGCGGCACC GGCAACTCCC 003120
003121 CAAGGCTCCG GCTCCATGAC CCTCAGATTT GAATAATGGT AGCACCATCT GCTATCCAGG TCTCCAGCTT CATGATCCTT 003200
003201 AAACTAGAAC AGCAGCACCA CTGCCTCCCT GGATTTCCAG CTCCACGACC CTAAGACATG AATGGCAGAA CTAGCTCCCC 003280
003281 ACCAGTTTTC CAGCTCCAGG ACCCACAGAT TTAAAGGACA GCACCAGctc ttcccgggat ctccagctcc actaccctca 003360
003361 aactagaaca gcagcactgg ctcctccctg ggtctccagc tcccaaacca tcaaactTCA ACTGACACAC AGGAACCTCC 003440
003441 CCACAGTTAA ACAGCAGCAC GGGCTGTTCC CCAAAACTCC AGATCCACAA CCTTCTGACT TAAATGGCAG TAGCACTGGc 003520
003521 tcctccctag gtctccagtt ccatgaccct caaactacac agcagtacca gctcctcccc aggtgtacag ctccacCACC 003600
003601 CTCACACTAG ACACCAAGAC TACCTCCTCC CCGCTCTCTA GCTACACGAC CCTCAGACTT GAACAGCAGC AGCGGATCCT 003680
003681 CCCTGTACCT CAAGCCCCAT GACCTCGGAT TTCAACAACA ACAACACCAG CTCCTGCCTA GGGCTCCAGC TCCAGGACCC 003760
003761 ACagatttaa acgacggcac cggctctccc caggatctcc agcgccacta cccttaaact agaacagcag caccgcctcc 003840
003841 tctctggttc ttcagttcca caacactcag gcatgaacag cagcaccggc tcttccttgg gtctccagct tcactaccct 003920
003921 cagactagaa cagcaacact tgttcctccc tggatctcca gctcaatgac tcccagactt gaaaggcagc accaactcct 004000
004001 ccatggatct ccagctccat gacactcaaa acaacatggc tcctccctgg gtctgcagct ccaggaccct cgaactacaa 004080
004081 caacattgtt cctccctggg tctgcggctc catgatcctc aaactcgaac aagacctctc ctccctgggt ctccagcttc 004160
004161 cggaccctca aattacaaca acattgctcc tgcctgggtc tgcagctcca cgaccctcaa ataagaacaa gacctctcct 004240
004241 ccctgggtct ccagcttcct gaccctcgaa ctacaacaac attgctcctg cctgggtctg tagctcgaca accctcaaac 004320
004321 tagaacaaga cctctcctcc ctgggtctcc agcttccgga ccctcgaatt acaacaacaa tgctcctgcc tgggtctgca 004400
004401 gctccattac cctcaaataa caacaagacc tctcctccct gggtcgccag cttccggact cgaactacaa cactgctcct 004480
004481 ccctggatct gtagctcgac gaCCCTTAGC TAGAacaaga cctcttttcc ctggtttgcc agcttccgga ccctcaaact 004560
004561 aaaacaacat tgctcctgcc tgggtctgca gctccacgac cctcaatctc aaacaagacc tctcctccct gcgtcgtcag 004640
004641 cttctggacc ctcaaattac aacaacattg ctcctgcctg ggtctgcagc tccatgaccc tcaaataaca acaagacctc 004720
004721 tcctccctgg gtcgccagct tcctgaccct tgaattacaa caacattgca cctgcctggg cctgtagctc gatgaccctc 004800
004801 gaactagaac aagaactctc ctccctgagt cgccagcttc ctgaccctcg aactacaaca gcattgctcc tccatgggtc 004880
004881 tgcagctcca caaccctgaa actagaacaa gacctctcct ccctgggtct gcagctccac caccctcacc ctagaacagc 004960
004961 agcaccagct ccttcctgga cctCCAGCTC AATGACTCTC AGACTTCAAA GGCAGCACCA GCTCCACCCC CAGGCTCCAG 005040
005041 CTCCAACACC CTCAGATTTG AGCAGCGACa acaccagctc ctttctgggt cttctgtttc acgatcctta aattagaaca 005120
005121 gcagcaccat cttctccctg ggtctccagc tccatgagac tcaagctaga atagcagcac cagctcctct tggatcttca 005200
005201 gctCCACGAC CCTAAGACAT CAGTGGTAGC ACCGGCTCCT CCCCTGGGCT CCAGCTCCAG GACCCTCAGA CTTGAACAAA 005280
005281 AACACCAGCT CCTCCCCAGG CCTCCAGCTC CTTGACCCTC ATAAACAATC CCTTCTTATG AAATGTAGCA GTCAGGAAAA 005360
005361 CTGTAGAGGA AG
[back to top]

Predicted Small Protein

Name NONHSAT120823_smProtein_2309:2530
Length 74
Molecular weight 7896.9945
Aromaticity 0.041095890411
Instability index 68.8684931507
Isoelectric point 9.83697509766
Runs 14
Runs residual 0.0476358815731
Runs probability 0.0395752895753
Amino acid sequence MTLRFETQHRLLTKFLAPRPSNYNSSSCCTLGLQLHNPQSRKAALALPQVSSSSSLRVVE
LETQGGVSAAVLV
Secondary structure LLEEEEHHHHHHHHHHLLLLLLLLLLLHHHLLLEELLLHHHHHHHHLLLLLLLLLLEEEE
EEELLLEEEEEEL
PRMN -
PiMo -