NONHSAT120936
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT120936 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2705 nt |
Genomic location |
chr7-:63228635..63231425 |
Exon number |
2 |
Exons |
63228635..63229571,63229658..63231425 |
Genome context |
|
Sequence |
000001 CCAGCGAGGC CTCCCGTGGC GTCAGCGTGT TCGTGTGGAG GAATGTGGAA CCTCACTCTG TGGCCGTGTT CCCCTGGTAC 000080
000081 TCCGTCCCCT TCCTGACCCC TCCCTGGAGC CACACGAGGC CCAGCAACCT GCCAGTCACT CAGTGGCCTC CAACCAGAGC 000160 000161 AAACAACCTG CCAAGTTGGC AGCTGTTGCT CATGAGCATC CACCAGGTGG GACAGGGAGT GTTGACCCTG GGTGGCCCCC 000240 000241 TGGAGCCACC TGCCCTGAAA GCCCAGGGCC CAGAACCCCA CACACTTTGG GGGTGGTGGA ACCTGGTAAG GGCCCACCTC 000320 000321 CCACCATGGA GGAGGAGCCC TGGGCCCCTC AGAGGAGTCC CTGCTGGACA ATGAGACAGA GAATGACCAC GATGATGCTT 000400 000401 TCCTCTCCGT CATGTCTCCT GACACCCAGT TGCCTCTACC ACTCAGATGA TGTCAGGCCC AGTCCCTCAG TGCCCTGCGC 000480 000481 AAGGAACAGG ACTCATCTTC TGAGAAGGAT GGATGCAGCC CCAACAAATG GGACAAGGAC CACATCCCGT GGCCCATAAG 000560 000561 TGGTGGTCAT GAGCTTCAGC AAGCGGCACC AGGCCCTGGC AGGGCGCACC AGGGTCACCC CAACCAGGAC AACCGGACCG 000640 000641 TCTGCCAGAT CCTGAGCGAG CGGTGGTACA CCCTGGGGCC CAATGAGATG CAGAAGTACC ACGACCTGGC CTTCCAGGTG 000720 000721 AAGGTGGCCC ACTTGCAACA GGGACCGAAA GAAGTACAGC TCAGAGGCCA AGCCCACAAG CCAGGGGCTA GCAGGAGTAT 000800 000801 ACAAGGGCTC CTGGGAGCAG AGTATATCAG AGACGAGCAC TGCCACTGCC CCTGGGGTGT CCTCTGAACT CCTGTCAGTT 000880 000881 GCAGCCCAGA CACTCCAGAG CTCGGATACC AAGGAGCAGC TTCTGTGGGG CAGAACGGCT GCATACAGGG AACCTGGCTC 000960 000961 AGCCTGGCCC AAGCCTTCTC CCACAGGGGT GTACACAGCC TGGACGGCAG GGAAATAGAC CGTCAGGCAC TACAGGAACT 001040 001041 GACAGAAGTG GTGTCTGGCA CTGCATCATA CTCTGGCCCA AAGCCTTCTA CTCAGTATGG AGCTCCAGGC CACTTTGCAG 001120 001121 CCCCTGGTGA GGGAGGTGAC CAGTAGGCAG CCCTGCTGCT GCCCACCTGA GCTGCTCATT CCCAGCACAT GGCCAGTGAC 001200 001201 GACATAGTGA GTGATGAGGA GCACATGGTC ATCCATGAGG AGGAGGGGGT GACAATGTCA TTGCTGATGA CGGCTTTAGC 001280 001281 ACCACTGACA CTGATCTCAA GTTCAAGGAG TGGGTGACCG ACTGAGAGTG GTGACAGCTC TGGGGAGGAG CCAGAGGGCA 001360 001361 ACAAGGGCTT TGGTGGGAAG GTATTTGCAC CTGTCATTCC TTCCTCCTTT ACTCCTGCCG CCCCTTGCTG GATCCTGAGC 001440 001441 CCCCAGGGTC CCCCGATCCA TCTGCAGTTT TTGGCAAAGT CCATGGTCCC ACCCCCTCCT CCTCCTACAC ATACTCGGAT 001520 001521 GCTTCCTCCT CAACCTTGGC ACCCACCTCC TTCTTACTGG GCCCAGGAGC CTTCAAAGCC TAGGAGTCTG GTCAGGGCAG 001600 001601 CAGAGTGGGC CCCCTACGGC CCCAACCCCT GGGGATGGGG GCCCAGGGAT GCCTTCCAAG GTGACCTGTT TCCTCCCAAT 001680 001681 GGATCCTTCC ACCTTCTGGT GCAAGAGACC TGAAAGTGTG GGCGACCTGG AGCTACCAGG CCCCTCAGTC ATCGCAGTCC 001760 001761 CTCCCAACAG AGGGAACCCC ACGGACATGG ATCCCGCACT GGACGACCCC ACCACACCCA AATGCAAGAT GAGAAGATGC 001840 001841 TCCATCTGCA GCCCAAAGCC CAACACCCCC AAGTGTGCCA TGTGTGATGG GGACAGCTTC CCCTTTGCCT GTACAGGTGG 001920 001921 AGAAGCCAAG GACGGGCTCA GGGAACCGGA GACCGAGAAG GCGCTGTCCT CTTCACTGCA CGCGCCCTGG ACCAGTGCCG 002000 002001 GCCCTGATCG TGCAGCTTTT CCAGGCCCAC TGCTTCTTCC TGTCCACTAG GCCACAGCCG CTCTCCAGGC CCACTATGCA 002080 002081 CACATCTTCC CCTCCAAGGT TTGTTCTGCC CCTGCCCTGA CTCCCAGCCC TGAGGGGGTC CTGTCCCCAC CTCACCTGGC 002160 002161 TCAGACTCTG ACGCTGCCCT GGCTGCCCCA CCACTGCCTC TGCCCAAGAG TCACGTGAGG CTGAGAGTAG GGGCAGGGGC 002240 002241 AGCAATGGTG CCAGTTGGGG GGCGGTCCAG TGGGAGGAGG CTCAGCCTCG CGGGCTGCTC CGTGGGACTG ATGACTGCAT 002320 002321 GATCTTCTGG GCACCTCACG GATCTTCAAC TGCAGGTGAA ACGGATGCTG GTGGTGGGTG CAGGGCCGCT GGGAGCCGCT 002400 002401 GCATGGGTCC CAGAGGCTGG ACTGGGGCAG GTGCCAACTG AAGCTGCTGG GGCAGCATGG GCAGGATGCT CTGCACACAA 002480 002481 ACCTTGGAGA AGAAGATGTG TGCATAGTGG GTCCACTGCT GCTGCccctg ccctgactcc cagccctgtc tgaccccacc 002560 002561 tcaccctgct caggctctgg cgcaaccctg gctgccctgc cactgcctct gcccCAGAGC TGGGGCCTCG ACAGCCTGGC 002640 002641 TGGAAGGGGA CACCCCAGCC CTGCCTCAAC ACCTGGGTCC CTCCATAACT ACCACAGGCA GGTGG |
Predicted Small Protein
Name | NONHSAT120936_smProtein_1886:2119 |
Length | 78 |
Molecular weight | 8577.0393 |
Aromaticity | 0.0519480519481 |
Instability index | 86.4064935065 |
Isoelectric point | 12.0022583008 |
Runs | 8 |
Runs residual | 0.0321852060982 |
Runs probability | 0.0301625154566 |
Amino acid sequence | MGTASPLPVQVEKPRTGSGNRRPRRRCPLHCTRPGPVPALIVQLFQAHCFFLSTRPQPLS RPTMHTSSPPRFVLPLP |
Secondary structure | LLLLLLLLLEEELLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHEEELLLLLLLL LLLLLLLLLLEEELLLL |
PRMN | - |
PiMo | - |