NONHSAT120952
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT120952 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2166 nt |
Genomic location |
chr7+:63364990..63385546 |
Exon number |
7 |
Exons |
63364990..63365116,63370203..63370271,63373596..63374159,63374502..63374595,63376397..63376793,63378173..63378372,63384832..63385546 |
Genome context |
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Sequence |
000001 AGAAATTAAT GTTATGACTG GATGAAGACA ATTGTGAAGA AACTGCACTT TGAGGTTGTC TATCTCTGTA TTCTGATGGA 000080
000081 AAAGCGTGGA GTTTAGAAGC ACTGCTCACT CCTTCAGTTT CTAACAAACT GAATAAATTC GACCATCTTC TGAGCATGTG 000160 000161 GTTTTGAGGA ATAATAAAAA TCCAGACCAT CATGAAGTAG TGGTGGGCAA CTGTAATCCC AGCTACTCAG GAGGCTGAGA 000240 000241 TAGGAGAATT GCTTGAGCCT GGGAGGCAAA GGTTGTGGTG AGTCAAGATG GTGTCACTGC ACTCTAGGTG ACAGAGTGAG 000320 000321 ACCCTGTCTC AAAAAGTAAA TAAATAAATA AATAACTGAA ATATTTACTT TATACTTCAG TAATGCTGAT TGTGTTTTGC 000400 000401 AAAATTTATG TTGTTCTTGT ATTTTAAAAA TATAAAGTTT TTATTAGCTC CCAAAGGCCA TATTATAGAC AGTATATCTG 000480 000481 TGTAAGAATA CCACCAATAT ATTGAGAACA TGATAAAAAC TTCTCCTACT GTCTCTTTAA TGCTTATTTG AAAATTTTCT 000560 000561 CATTAGTCTA TTATTAATGA TTGTAATGTA TTTTCTATGA AGTTTTACTG TTCTTCATTG AATAGCAATG ATTCACAATG 000640 000641 TCTTCTCTTC ATGAGTACAC ACAGTTAAAA ACTGCAGATA TCTAAAGAAT TATTTTTCAT AGTATATCTA TGTTGTATTC 000720 000721 AGCATTTTAT GCATTAAAAT CTCTCTTATT TTCAATTCTA GTTTGAGACT ATGGTTAGGT GGTGAGGAAG GCAGGCTCAG 000800 000801 CACCCAAGCC TTGGGGAGAC GCAGAAAGGG CCCATCCCAG GCACTCAGGT GGAGCACACA CAGTCTTCAC AAAAAAGTCA 000880 000881 GCTCTGAGTG TGAGGTGGTG TTAATCTGGG CGAGGCAATG ACAAGTGATG GCAAATAAAA ATAACCCTAA GACAAGATTT 000960 000961 TCAGAATAAA TTAAATTTTC TTAACTTACT GGAAAAAATT ACATTACTAG CCATGTAACA AACCTATTTT GTACAGGTGG 001040 001041 TGAAACCAAA TTTTAAGTAT AAATTATGAT GTATTAAAAA ACAAAAAGAA TATTTTTGTG GTCTTAGAAA AAAATTATTA 001120 001121 AATGAACCAA GTAAGCAGAA TATACAACAT TTTCAAATAC TAAAGAAAAA AATCATTGAA AATTGCAAAA TTTTAGGCTC 001200 001201 CAAAAGACTC ACTAATTTAA TAGAAGCAGA AATCCTACAG CTAGAAAATT TCAGGTGGTC TGTCCTAGAG AACGTTCCAT 001280 001281 GTGGATTTGA GAAGAATATA TATTCTCATG TTGGATGCAG TGCTGTGCAT ATGTTTGTTA GGTTTAGTTG TTTTATGTTG 001360 001361 TTGTTCATGT TTTCTATTTT TTATCTTCTG TCTACTTGTT CTATCCATTA ATATAAGTGA AGCATTAAAG TCTCCAACTA 001440 001441 TTACTGTTGA AGGGATAAAG GAAAACATCC TCATAATGAA TTAACTCATG TGGAGCCTCA GCAGAGAAAT GGAAATGATG 001520 001521 AAAAGAATGG AATAGAGAGA TAATGAAATG AAAAATTAAA AAGACCGTTG AGTTTATAAA CAGTAGAAAC AGAAGACAGC 001600 001601 AATAGAAATC ATCCAATCTG AAGAGTGAAA CAAGTTTGAA GAAAATGAAA AGCGCCTTGG AGACCTGTGG AATGACTGAG 001680 001681 TCCGAGAAGG AGAGGGAGAG ACAGAAAAAT TAAATGTGAT ACAAAAGCAA ATAAACAATA GCCGAAAACT TGCAAAATTT 001760 001761 GGTCAAAACC CCAAATTTGT ATATTCAAAA GGTGAGCACA CTTCAAAAAG AAAATACACA TAAAACCATA CCAAGGCCCT 001840 001841 ATTAGAAGAC TGGCAGGGCA GGGTTTTCAA GGGACTTGCT ATGATTTCTC ATTTTCACTA TTTATAATAA TGGACAATAT 001920 001921 GCTCTCCTTA GAGTTTTCTT CCTGCAGAAA GTCTGTTACG TCAGGTGCAG ATGACTTTTT AGTCTAGTTT TCAAGGTTTA 002000 002001 ATTTCTTAAC TTGGAAATCA ATTAAATTTG TTTCTTAAAA TCTTGCAGTA AAACTGATGC TCCAGAAAGA TGCCCAGGGA 002080 002081 GATTCTGTCC TGCTGCGTCC GCACTGTACA GAACTGACGC TGTGCCTACG CCCGTTTCAG AAGCGTGGAG TACTTAAGAG 002160 002161 TTAATC |
Predicted Small Protein
Name | NONHSAT120952_smProtein_1307:1483 |
Length | 59 |
Molecular weight | 6354.8822 |
Aromaticity | 0.0689655172414 |
Instability index | 47.0672413793 |
Isoelectric point | 4.40655517578 |
Runs | 11 |
Runs residual | 0.0330617658204 |
Runs probability | 0.0378105378105 |
Amino acid sequence | MLDAVLCICLLGLVVLCCCSCFLFFIFCLLVLSINISEALKSPTITVEGIKENILIMN |
Secondary structure | LLHHHHHHHHHLLLEEEHHHHHHH |