NONHSAT120952

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT120952

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2166 nt

Genomic location

chr7+:63364990..63385546

Exon number

7

Exons

63364990..63365116,63370203..63370271,63373596..63374159,63374502..63374595,63376397..63376793,63378173..63378372,63384832..63385546

Genome context

Sequence
000001 AGAAATTAAT GTTATGACTG GATGAAGACA ATTGTGAAGA AACTGCACTT TGAGGTTGTC TATCTCTGTA TTCTGATGGA 000080
000081 AAAGCGTGGA GTTTAGAAGC ACTGCTCACT CCTTCAGTTT CTAACAAACT GAATAAATTC GACCATCTTC TGAGCATGTG 000160
000161 GTTTTGAGGA ATAATAAAAA TCCAGACCAT CATGAAGTAG TGGTGGGCAA CTGTAATCCC AGCTACTCAG GAGGCTGAGA 000240
000241 TAGGAGAATT GCTTGAGCCT GGGAGGCAAA GGTTGTGGTG AGTCAAGATG GTGTCACTGC ACTCTAGGTG ACAGAGTGAG 000320
000321 ACCCTGTCTC AAAAAGTAAA TAAATAAATA AATAACTGAA ATATTTACTT TATACTTCAG TAATGCTGAT TGTGTTTTGC 000400
000401 AAAATTTATG TTGTTCTTGT ATTTTAAAAA TATAAAGTTT TTATTAGCTC CCAAAGGCCA TATTATAGAC AGTATATCTG 000480
000481 TGTAAGAATA CCACCAATAT ATTGAGAACA TGATAAAAAC TTCTCCTACT GTCTCTTTAA TGCTTATTTG AAAATTTTCT 000560
000561 CATTAGTCTA TTATTAATGA TTGTAATGTA TTTTCTATGA AGTTTTACTG TTCTTCATTG AATAGCAATG ATTCACAATG 000640
000641 TCTTCTCTTC ATGAGTACAC ACAGTTAAAA ACTGCAGATA TCTAAAGAAT TATTTTTCAT AGTATATCTA TGTTGTATTC 000720
000721 AGCATTTTAT GCATTAAAAT CTCTCTTATT TTCAATTCTA GTTTGAGACT ATGGTTAGGT GGTGAGGAAG GCAGGCTCAG 000800
000801 CACCCAAGCC TTGGGGAGAC GCAGAAAGGG CCCATCCCAG GCACTCAGGT GGAGCACACA CAGTCTTCAC AAAAAAGTCA 000880
000881 GCTCTGAGTG TGAGGTGGTG TTAATCTGGG CGAGGCAATG ACAAGTGATG GCAAATAAAA ATAACCCTAA GACAAGATTT 000960
000961 TCAGAATAAA TTAAATTTTC TTAACTTACT GGAAAAAATT ACATTACTAG CCATGTAACA AACCTATTTT GTACAGGTGG 001040
001041 TGAAACCAAA TTTTAAGTAT AAATTATGAT GTATTAAAAA ACAAAAAGAA TATTTTTGTG GTCTTAGAAA AAAATTATTA 001120
001121 AATGAACCAA GTAAGCAGAA TATACAACAT TTTCAAATAC TAAAGAAAAA AATCATTGAA AATTGCAAAA TTTTAGGCTC 001200
001201 CAAAAGACTC ACTAATTTAA TAGAAGCAGA AATCCTACAG CTAGAAAATT TCAGGTGGTC TGTCCTAGAG AACGTTCCAT 001280
001281 GTGGATTTGA GAAGAATATA TATTCTCATG TTGGATGCAG TGCTGTGCAT ATGTTTGTTA GGTTTAGTTG TTTTATGTTG 001360
001361 TTGTTCATGT TTTCTATTTT TTATCTTCTG TCTACTTGTT CTATCCATTA ATATAAGTGA AGCATTAAAG TCTCCAACTA 001440
001441 TTACTGTTGA AGGGATAAAG GAAAACATCC TCATAATGAA TTAACTCATG TGGAGCCTCA GCAGAGAAAT GGAAATGATG 001520
001521 AAAAGAATGG AATAGAGAGA TAATGAAATG AAAAATTAAA AAGACCGTTG AGTTTATAAA CAGTAGAAAC AGAAGACAGC 001600
001601 AATAGAAATC ATCCAATCTG AAGAGTGAAA CAAGTTTGAA GAAAATGAAA AGCGCCTTGG AGACCTGTGG AATGACTGAG 001680
001681 TCCGAGAAGG AGAGGGAGAG ACAGAAAAAT TAAATGTGAT ACAAAAGCAA ATAAACAATA GCCGAAAACT TGCAAAATTT 001760
001761 GGTCAAAACC CCAAATTTGT ATATTCAAAA GGTGAGCACA CTTCAAAAAG AAAATACACA TAAAACCATA CCAAGGCCCT 001840
001841 ATTAGAAGAC TGGCAGGGCA GGGTTTTCAA GGGACTTGCT ATGATTTCTC ATTTTCACTA TTTATAATAA TGGACAATAT 001920
001921 GCTCTCCTTA GAGTTTTCTT CCTGCAGAAA GTCTGTTACG TCAGGTGCAG ATGACTTTTT AGTCTAGTTT TCAAGGTTTA 002000
002001 ATTTCTTAAC TTGGAAATCA ATTAAATTTG TTTCTTAAAA TCTTGCAGTA AAACTGATGC TCCAGAAAGA TGCCCAGGGA 002080
002081 GATTCTGTCC TGCTGCGTCC GCACTGTACA GAACTGACGC TGTGCCTACG CCCGTTTCAG AAGCGTGGAG TACTTAAGAG 002160
002161 TTAATC
[back to top]

Predicted Small Protein

Name NONHSAT120952_smProtein_1307:1483
Length 59
Molecular weight 6354.8822
Aromaticity 0.0689655172414
Instability index 47.0672413793
Isoelectric point 4.40655517578
Runs 11
Runs residual 0.0330617658204
Runs probability 0.0378105378105
Amino acid sequence MLDAVLCICLLGLVVLCCCSCFLFFIFCLLVLSINISEALKSPTITVEGIKENILIMN
Secondary structure LLHHHHHHHHHLLLEEEHHHHHHH