NONHSAT121221
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT121221 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1177 nt |
Genomic location |
chr7+:66172841..66181420 |
Exon number |
4 |
Exons |
66172841..66173295,66177154..66177211,66180750..66181354,66181361..66181420 |
Genome context |
|
Sequence |
000001 TATAATGTCC TTCTTTGTCT CTAGTAACAT TTTTTTTGTC TTAAAGCCAA TTTTTTTCTG ACATTAATAT AGCCACTCTA 000080
000081 GCTCTCTTTT GGTTACTTTC TGCATGGAAT ATTTTTGCAT CCTTTTACTT TCAACCTATT TGTGTTTTTT AATCCATTCT 000160 000161 GCCAATCTGT GCCTTTTAGT TAGAGACTTT AACCCATTTA ATTTAATGTA ATTAATCATA AGGATTTACT TCTCCCAGTC 000240 000241 TATATGCCAT TTGCCTTTTT ATTCCTTGGT TCTTCCATTA TAGCCCTCCT TTTATGTTCT GTAGATACTC TCTAGTACAC 000320 000321 CATTTTAATT CCTTGTTGTT ACTTTTACTA TATATTTTTT AGTTCTTTGT GTTTGCCCTG GGATAACAAT TAACATCTTT 000400 000401 GTTTATAGCC ATGTAGTTTG GGTTTTTTTT TTTTCCTAAT TTTTTCTTTT GAGACATCAC TTTGGGAAGC AGTGACATCC 000480 000481 AACCTGTATC AAGTCTTCTA ATCTGTGAAC ATGAGATGGG TCTCGGCTGT GTTACCTAAG CTGGAGTGCA GTGGCTATTC 000560 000561 CCAGCACAAT CATAGTGCAC TACAGTCTCC AACTCCTGGG TTCAGGTGCT CCTTGTGCCT CCGCCTCCTG AATAGCTGGG 000640 000641 ATTGCAGGCA TGTGCCATCA TGCCTGGCTA TGTGCCTTCA AAAAGACTAC AGTTGTGGAT GGAGTGTTTT ATCAATATTA 000720 000721 GTTGGTTTAT GATTGTGTTT AGTTCCATAT CCTAGCTGAT TTTCTATCTG TTCTGTCCAT TCTTGAAGAG TCCAACTATA 000800 000801 ATTTTGAGTT TGTCTATTTC TCCTCAAGTT CTGTCAGTTT TGCTGTATAT ATTTGAGGTC TGTTTTTAGA TGTGTACACA 000880 000881 TTTTAAATGG TGTTGGGTCT TTACCATTAT GTAATGTCCC TCTTAATCTA TTGTAAATTT CCTTGCTTTG AGGTATAGTT 000960 000961 TGTCTTATGT AAATATAATC AGTTCAGTTT TCCTTTGACC AGCATTTACG TAACATATCT TTTTCCATTT TTAAACTTAT 001040 001041 AATCTACCTA TATTAAAATA TATAGTCAGG CCAGGTGCAG CGGCTCATGC GTGTAATCCC AGCACTTTGG GAGGCCGACA 001120 001121 GATCACTTGA GGCCAGGAGT TTGAGACCAG CTGGGCAACG TGACGAAAAC CTGTCTC |
Predicted Small Protein
Name | NONHSAT121221_smProtein_659:754 |
Length | 32 |
Molecular weight | 3711.4402 |
Aromaticity | 0.193548387097 |
Instability index | 101.670967742 |
Isoelectric point | 7.95391845703 |
Runs | 5 |
Runs residual | 0.0399865591398 |
Runs probability | 0.0387740681858 |
Amino acid sequence | MPGYVPSKRLQLWMECFINISWFMIVFSSIS |
Secondary structure | LLLLLLHHHHHHHHHHHHHLLEEEEEEEELL |
PRMN | - |
PiMo | - |