NONHSAT121356
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT121356 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2558 nt |
Genomic location |
chr7-:71244476..71246986 |
Exon number |
1 |
Exons |
71244476..71246986 |
Genome context |
|
Sequence |
000001 ACGCGTCCGA CTCTTCATAG GGTCTCGAGA GACATGACAA TACTGTTCAA AACGTCTCCA AGGCAAAATT AATTTTATTC 000080
000081 CGTTGACTGG AAATATATCA CAAAGAATGA GGTTTTTCCA GTCCCACCCA CAAGACAGTC CTCTGAAAGT GGAAAAGCTT 000160 000161 GCCCGGCCAC CTGCCCCTAC CCTGACCTTG GGGTAGTTCA TCAGTTGAGC ACAACCCCCA TGCCGGGCAT AGACTCACCC 000240 000241 ATCTCTTTTC CTCAGGTGTG ATGGGTTGGC TTTCAAACTA GTGTTTCTCG CACTGTTAGA AGTTATTGTC CAAGTGGAAA 000320 000321 GGATGCAGAG GCTGGAATTT TCCAGTGGGA TAGAAGAGCA GGCTAATTAG GAAGGAATAT TCCAGGGAAT GCAAGGTGCA 000400 000401 ACTGCGATAT TGCTCCATCC CTGGACCTGA GGGAGACAAA GAAAGTTCTT AAAGGGCTGC AGATGCTGTC CTCTGAAGGT 000480 000481 CTTCTCTGGA TCGCTGGCCT ACTTTGGAAA CATGCAGGCC ATTGAGTGCC ATGGGGCTGC CCATCAGTCT GATCCACACG 000560 000561 AAAGGCTCTG TGCATTTCAA GAGCAGGCTG GTAGCTCGCC ATTCCTGGGA GGATGCTGAC ATCTGTCAAG CCCAGAATGC 000640 000641 CTCTCTCAGG GCTCTCAGAC CTGTTAAACT GAGGCCAGGA GAGCAGAAGA AAGAACTCAA AGTGTGGACG GTACTACCAG 000720 000721 CTGGAGAAAG CCCAGGAGCC AGGACTCTTC CACCCACTAT CTAGGTTATG TTGAGTGACA TTCCTCCCTG GCTTCAGGTT 000800 000801 TCTCTAAAGC CAGAGGAAAA GTAAACCAGA CAAGCCCTCC CATCTATTTT GTCTGAAACA AGATGGAGTG AATGCTCCCT 000880 000881 ACTGAGAGGG TCTGGATTTC ACCCATGAAT TGCACTAGGA ACTGGGAGCT CCTTTTTGAA CACAAGTCCC AAGAGGCAGT 000960 000961 TGTGATAAAG TCTCTCTTTT GGTGTCCGCT GTCTGTAAAT GAAACAATGC AAATTGGTGT ATGTTAAATG TGTCACAGCT 001040 001041 TGCAGGCAAG AGGTTTTGTT TATTCTCTAA GGACTTGCTG ACTCGAGGGA GCATCAAAGA TGAGCTTTCT GTCTGTCTTG 001120 001121 GCAAGTGTGA AAATAAAGGG AGTCAGTCAC CTCCCCAAAG GTCATGTGAA TCAGAATTCA GGAGAAAGTT GGAGGAAACA 001200 001201 ATGGCAGATT CCAAGAAGAG ATGCTTGTTT CTCCATTTGA GAAAGCCTTA CTGAAAGCTA CTGAATAAAG AGCACAATTT 001280 001281 CCAGTTATTT CTTTCTTTGC TTTTTTTTTT TTCTGGCCAC TATAACAGCA CTTCCAGTAT ATGTTGATAG TAGCTTGTAA 001360 001361 TTATTCCTAA TACCCCAGAA AGAAGAGAGT CGTGATCTTT GGTGATTGTG AGGAATTAGA TTAACAGTCG CGGGGGACCG 001440 001441 GCTACCTGCG ACAGCCCTTT AAATGGCTAA TGAGGGATGC TGAGTGCTGA GCGGTGCCTG CTTTTGATGT GGCCCACCCA 001520 001521 TGACCAGGGA GAGAGGGCAG GAAGAGAGCA GCTGCAGGAT CCACAAGTCT CTAACCCTTC TGCCCCAGGC AACATAAAAC 001600 001601 CCTAGATTCT TGTTCTTTTT CCCTCTTCCT AAAGTAGACT GACGTCCCAG TAATTGTTTT TCTAACAAGC CCTGTTGTTC 001680 001681 TCCCTGGGAA AGACCTAGAT TGGCCAAGAA AGGATCCTGT CAGCTCCTGG TGGAGAGTTG CACAAGCCAG TGGCTCTCAA 001760 001761 CTCTCTCCAA GGAAAATTAA AGCATATTTT CTCTTTCTTA GCTCAAAATC AGCTTTCAGG GGTCCTTATT GGGGTCTGAT 001840 001841 TTTCTTCCCC AGTTCTGAAT CCAGGAAGAA GCTTTTTCTC CAAGGACCAA CCAAAAACAA TGACTTTGGA GAAAAATTAG 001920 001921 ACTCAGAAAG TCTGTCCAGG CATTGGGTTG GTGAACTGTC AACTGTTGGA TGGGGAGGAG GGGTCGCTGT GATCGTAGCG 002000 002001 GTCATTAGAC TTGGGACGTG AGTTGTCTCT CAAAGCACAG TAGTAAATGA CTGTATTTTG TATATTGCCC CCAATATGTT 002080 002081 GGGTGTAAAT AGAAGCACAG CTGGGGATTG ATCATGGCCA GGACGATTGG AGCTTGGCAG CTCTCATATC CAGAATAAGC 002160 002161 CACTAAGACG GAACTCATCA ATCACCATCT TCCCATTTAC CTCATTAGCA TCCCATTTTC TCTCATTCAG TATTAGTTGA 002240 002241 TGATTTCTGC TATTAAGTGA TGAGAAAGTC AGCAGACTAG TCAAAAAAGA ATCTTTATAT AAAATGTACA TATTAATATA 002320 002321 AATTAACTTA GCATGCAACT TACCGATCAA ATGAAGTATA TATTATTAAT ATGTTATCTT AGTGTATAAA GGAAAACTGC 002400 002401 CATATTTACC AGATGTTTTC TTTAACCGAA CTTGTCTGTA AATATATAAT CTGTATAAAA AGAGTCTAAT TTACCATTAT 002480 002481 TTATGCAATA GAAAAAATAA AAGTTTTTTT TTCTTTTGAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAA |
Predicted Small Protein
Name | NONHSAT121356_smProtein_530:763 |
Length | 78 |
Molecular weight | 8490.8261 |
Aromaticity | 0.038961038961 |
Instability index | 41.0428571429 |
Isoelectric point | 10.2809448242 |
Runs | 13 |
Runs residual | 0.0327498588368 |
Runs probability | 0.0314228255405 |
Amino acid sequence | MGLPISLIHTKGSVHFKSRLVARHSWEDADICQAQNASLRALRPVKLRPGEQKKELKVWT VLPAGESPGARTLPPTI |
Secondary structure | LLLLEEEEELLLLEEEELLEEEELLHHHHHHHHHHHHLHHHLLLLLLLLLLLLLEEEEEE EELLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |