NONHSAT121414

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT121414

Source

NONCODE4.0

Same with

,

Classification

sense

Length

3886 nt

Genomic location

chr7+:73108444..73112466

Exon number

2

Exons

73108444..73112024,73112162..73112466

Genome context

Sequence
000001 CTTTCTCTCT GCCCTCACCC AAGCCTCTCA GGTCACATGC AGCAGGGACA CCAAGGTGAC GGTAGAAACA TCAGGTCCCA 000080
000081 TTTGGACTGT GCCTGTTTGG GGCTAGGGGT TTGGGGTCCT GGATGTCTGG GTGCAGCCAT GCAGCCTGGA CTCCCTTTGt 000160
000161 gagcccacac atgccccttc cccttgccac gcctggcagg ctgtctcctt cttttctgat gctgccctcc acctgcatct 000240
000241 gggaccctct cccttgggtg ctgtggctct cccttccttc ctgcatcctc atcttgactc tcctgggtca ctgctgtcgg 000320
000321 cacacagaca tgctgcacaa tttctccttt tctagaaaag ttccttcctt aaccccataa caacaactaa ccaccccgtt 000400
000401 gttgcttccc ttcatagcag aactcagacc tgcctcttct tcccctccca ccattctctc aatccacttc tcaggctgac 000480
000481 aattctgtct catcacaaat tgttcttgtc aactccacca ccaatttcca tcaagccaca tctggtcact tgtgactttt 000560
000561 tttcatgtcc ttaatgtgcc tgctcggtag ggtcaaagac agcagtgcgc tccctccttg acgcttcctt cacttggcct 000640
000641 tccacccacc atcgtggttt cctcagcctt cctggctgct cctcactcca ctgctgcttc ctcttcgagt gctgggccca 000720
000721 gcctggattg gatcccttct ctacctgtgg tgctgtaaat gccagccgga aggtcctaat tcccaaatgt gtatcttcag 000800
000801 tctcttgcca cctggggttt cccaatgccc cctcagtgtc tatacctgga gtttccatgg gtagtctctc tctgttaccc 000880
000881 aggctagagt gcagtggtgg aatcttagct cactgcagcc tcgaactcct gggctcaaat gatcctcctg cctcagcctc 000960
000961 ccaagtagct gagactacag gtgcatgcca ccatgcctgg ttaattttta aagtttttgg tagagatgag gtcttgccat 001040
001041 gttgttcagg ctgatcttga actcctggcc tcaagcaatc cccctgtctc ggcctcccaa agttctggga tgactgatgt 001120
001121 gagccaccat gcctggccAT CCTCCAttct tttttttttt tgagatggag tctcactctt tccccccagg ctggagtgcg 001200
001201 gtggcttgat ctcggctcac tgcaacctct gcctcccagg ttccagcgat tctcttgcgt cagcctcccg agtagctggg 001280
001281 attgcaggcg cccgcccaac taattttttg tgtttttagt agagacaggg tttcaccatg ttggccaggc tgttctcaaa 001360
001361 ctcctgacct cgtgattcgc ccgcctcggc ctcccaaagt gctgggatta caggtgtgag ccactgcgcc tggcctcatc 001440
001441 ctccattctt taccattctt gatcattcct gtctttccct acatttcaca tcttgtcagc ctgtcattga gccctgctgt 001520
001521 ccgtccctca gtgtgtatcc ccgtgctgac cctccctgct tccaacgagc ctaatccagc actgccccta gcctggattg 001600
001601 ctgaacagct gcctgtgttg tctccttgcc tttgcagtct ttgcctcttt cagattattt tctgcatagc agcaagactg 001680
001681 gtctttttct ttttttctaa aatgtaagtt gtatcttgtc attgctctTT TAGTGCCTTC ATTGCAGTTG TGCTCCCCGC 001760
001761 TCATGTTGAt tttccttaac acccttcact gctctaagtc atacacatac cagttgactt ggttattatt tgtatctcca 001840
001841 gctagagtga aaacttggtg aggactggta ttatatccct gacattaaaa atagtgtctt gttagtaaaa agtgctcagt 001920
001921 atttttctga atgaataaTT GATTATAAGG TAGTGAAGAG GGAGGTTATA TCTGAGGTCC AGTTGACATG AGGGAAAGGT 002000
002001 CTTAAGACCT TTAAGACATT TAAGAGGAAA AATGAGCCCA AAATGCATGT GTTTGGAAGG CCCACAGCTG GGCACAGCCA 002080
002081 TGCATGTTCC TCACGTCCAC CATAGGTTTA TGCTGCCTGA CCCCTTGGGT CTTTGCTCAT TTCCCTTAGT TTCCCTAGTC 002160
002161 CATTCCCCAT GGGGAGCTGG GACCCTTCTG GATGACCTCT TCTCTGAGGC GCCCATCTCG TGCTCCCAGG GAGCACTCCC 002240
002241 ATCTCCTCCC TCCCAGGGGA AGTACACATT GCCTTATCTC CATGTGTCTT AGGATCCTTC TTGTCCTTAC ACTGGTGTCT 002320
002321 TCAAACGACA TGTCCTAAAA GTAAATGTGG GTAAGTTGAA TGACCTGAGC ATCCATTCCT CAGCTATTCA AAAAGTAGGG 002400
002401 GTAGTGCCAC CTATCTTGGC AGTGTGTTGA GGGTGCCCAG CACGTACCTT GCCATCCCTC GTTCTGTAGG CTCTCACTTC 002480
002481 CAGTTCCTCA GATGAGGTAC AGGGCAGGGA GGAGCTTCTC CCGTTACTGT CATCTCAGTC TAACCACATT CAGGACACTT 002560
002561 GTTTATTTTA AATAAACAGG TGAATTAAGA AAAAGTTTTT TAAGTCTTTA CCTAATCAGT CTCCAGGCTC TCTTTTTGGC 002640
002641 CTGTTCCTCC CTTCCTCCTG GCCGCCTCCC TCCCATGCCT CTCATGTGCC TCCTGCAGGG CTGGGCCCCC ACTTCTCTTG 002720
002721 GGACCTGTGC TTTGGGGCAC TCCCCGTCTT CACCTCCTTC CTTTAGCTCC ATTGATGACT TTCCCCCTTG CTGCTTCTCC 002800
002801 CATGGCTCAC CTCTTGCCCC CTGGTTCGCC ACTCTGCCCT CACTTTGTAC TCTTTGTAGA ATCTTGAGAT GACTCCTCCT 002880
002881 GTGTCCCCAG CCCTGCTCTG CAGCTGCTCC TGCTTTGTGC TGGCTCATCA GGCTCAGGCA TCCGAATGGC AGCTCCTTGG 002960
002961 CTTGCCCTGT CTCTGGTTTC TACGGATGGT CACAGGGGTC TTCGGGGTTA CCCCGCCCTC TTTCCTTCTT CCCTCATACC 003040
003041 CCTCAGTCCT TCCTTTTCAG ACCCTCCTTT CCATCCCTGT CTTCCTGCCC CCAAGCTGTG GGACCCTAAG CTCCTGCTGT 003120
003121 GAACTGTCGA CTGTGCTCTT GAAGTCTAGG TGATGATGTG TCATTGCATT GGTAGAAAGC GGCCTGCTTA CTGCTGCTTA 003200
003201 GCTGCTTCCC GAAGAGGGAA CAGACTGCTC GCTGGTGTTT AGGTCTCCAT GCCCGGCCCA GCTCTCTCCT CCTCTGCCCA 003280
003281 CCCAACAACC TCTGTGGCCC GGATGGATGT TATCAGGAAG GAGGGTGTCC AGAGCGGGGA ATTGTGTTAT AGGGAAGGTG 003360
003361 GAGCATTTGA GAGAAGGGGC ATCCGAGGCC ACCAGACTCG GAGGTAAGCT TGCCATGGAT TCACATGGGG GCCAGTCGGG 003440
003441 CAGCCCCATC CATCAGCTGT CCATCAGCTC ATAGCTGTGT CTCCGCCACA GGTTCCCATT AAGGATGTCG AGGCGGGGAA 003520
003521 TGGTGAGGAA GAGTCGGGCA TGGGTGCTGG AGAAGAAGGA GCGGCACAGG CGCCAGGGCA GGGAAGTCAG ACCTGACACC 003600
003601 CAGTACACCG GCCGCAAGCG CAAGCCCCGC TTCTAAGTCA CCACGCGGTT CTGGAAAGGC ACTTGCCTCT GCACTTTTCT 003680
003681 ATATTGTTCA GCTGACAAAG TAGTATTTTA GAAAAGTTCT AAAGTTATAA AAATGTTTTC TGCAGTAAAA AAAAAGTTCT 003760
003761 CTGggccggg cgtggtggct cacacctgta atcccagcac cttgggaggc tgaggtggga ggatcatttg aggccaggag 003840
003841 tttgagacct gcctgggcaa cataatgaaa cttcctttcc agggag
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Predicted Small Protein

Name NONHSAT121414_smProtein_122:379
Length 86
Molecular weight 9467.2254
Aromaticity 0.0941176470588
Instability index 66.3811764706
Isoelectric point 8.41375732422
Runs 10
Runs residual 0.0188948306595
Runs probability 0.0160748984279
Amino acid sequence MSGCSHAAWTPFVSPHMPLPLATPGRLSPSFLMLPSTCIWDPLPWVLWLSLPSCILILTL
LGHCCRHTDMLHNFSFSRKVPSLTP
Secondary structure LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEELLLLLEELLLLHHHEELLHHHHHHHHH
HHHHHHHHHHHLLLLLLLLLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHH
LLLLLLLLLLLLLLLLLLLLLLLLL
PiMo ooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTT
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