NONHSAT121414
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT121414 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3886 nt |
Genomic location |
chr7+:73108444..73112466 |
Exon number |
2 |
Exons |
73108444..73112024,73112162..73112466 |
Genome context |
|
Sequence |
000001 CTTTCTCTCT GCCCTCACCC AAGCCTCTCA GGTCACATGC AGCAGGGACA CCAAGGTGAC GGTAGAAACA TCAGGTCCCA 000080
000081 TTTGGACTGT GCCTGTTTGG GGCTAGGGGT TTGGGGTCCT GGATGTCTGG GTGCAGCCAT GCAGCCTGGA CTCCCTTTGt 000160 000161 gagcccacac atgccccttc cccttgccac gcctggcagg ctgtctcctt cttttctgat gctgccctcc acctgcatct 000240 000241 gggaccctct cccttgggtg ctgtggctct cccttccttc ctgcatcctc atcttgactc tcctgggtca ctgctgtcgg 000320 000321 cacacagaca tgctgcacaa tttctccttt tctagaaaag ttccttcctt aaccccataa caacaactaa ccaccccgtt 000400 000401 gttgcttccc ttcatagcag aactcagacc tgcctcttct tcccctccca ccattctctc aatccacttc tcaggctgac 000480 000481 aattctgtct catcacaaat tgttcttgtc aactccacca ccaatttcca tcaagccaca tctggtcact tgtgactttt 000560 000561 tttcatgtcc ttaatgtgcc tgctcggtag ggtcaaagac agcagtgcgc tccctccttg acgcttcctt cacttggcct 000640 000641 tccacccacc atcgtggttt cctcagcctt cctggctgct cctcactcca ctgctgcttc ctcttcgagt gctgggccca 000720 000721 gcctggattg gatcccttct ctacctgtgg tgctgtaaat gccagccgga aggtcctaat tcccaaatgt gtatcttcag 000800 000801 tctcttgcca cctggggttt cccaatgccc cctcagtgtc tatacctgga gtttccatgg gtagtctctc tctgttaccc 000880 000881 aggctagagt gcagtggtgg aatcttagct cactgcagcc tcgaactcct gggctcaaat gatcctcctg cctcagcctc 000960 000961 ccaagtagct gagactacag gtgcatgcca ccatgcctgg ttaattttta aagtttttgg tagagatgag gtcttgccat 001040 001041 gttgttcagg ctgatcttga actcctggcc tcaagcaatc cccctgtctc ggcctcccaa agttctggga tgactgatgt 001120 001121 gagccaccat gcctggccAT CCTCCAttct tttttttttt tgagatggag tctcactctt tccccccagg ctggagtgcg 001200 001201 gtggcttgat ctcggctcac tgcaacctct gcctcccagg ttccagcgat tctcttgcgt cagcctcccg agtagctggg 001280 001281 attgcaggcg cccgcccaac taattttttg tgtttttagt agagacaggg tttcaccatg ttggccaggc tgttctcaaa 001360 001361 ctcctgacct cgtgattcgc ccgcctcggc ctcccaaagt gctgggatta caggtgtgag ccactgcgcc tggcctcatc 001440 001441 ctccattctt taccattctt gatcattcct gtctttccct acatttcaca tcttgtcagc ctgtcattga gccctgctgt 001520 001521 ccgtccctca gtgtgtatcc ccgtgctgac cctccctgct tccaacgagc ctaatccagc actgccccta gcctggattg 001600 001601 ctgaacagct gcctgtgttg tctccttgcc tttgcagtct ttgcctcttt cagattattt tctgcatagc agcaagactg 001680 001681 gtctttttct ttttttctaa aatgtaagtt gtatcttgtc attgctctTT TAGTGCCTTC ATTGCAGTTG TGCTCCCCGC 001760 001761 TCATGTTGAt tttccttaac acccttcact gctctaagtc atacacatac cagttgactt ggttattatt tgtatctcca 001840 001841 gctagagtga aaacttggtg aggactggta ttatatccct gacattaaaa atagtgtctt gttagtaaaa agtgctcagt 001920 001921 atttttctga atgaataaTT GATTATAAGG TAGTGAAGAG GGAGGTTATA TCTGAGGTCC AGTTGACATG AGGGAAAGGT 002000 002001 CTTAAGACCT TTAAGACATT TAAGAGGAAA AATGAGCCCA AAATGCATGT GTTTGGAAGG CCCACAGCTG GGCACAGCCA 002080 002081 TGCATGTTCC TCACGTCCAC CATAGGTTTA TGCTGCCTGA CCCCTTGGGT CTTTGCTCAT TTCCCTTAGT TTCCCTAGTC 002160 002161 CATTCCCCAT GGGGAGCTGG GACCCTTCTG GATGACCTCT TCTCTGAGGC GCCCATCTCG TGCTCCCAGG GAGCACTCCC 002240 002241 ATCTCCTCCC TCCCAGGGGA AGTACACATT GCCTTATCTC CATGTGTCTT AGGATCCTTC TTGTCCTTAC ACTGGTGTCT 002320 002321 TCAAACGACA TGTCCTAAAA GTAAATGTGG GTAAGTTGAA TGACCTGAGC ATCCATTCCT CAGCTATTCA AAAAGTAGGG 002400 002401 GTAGTGCCAC CTATCTTGGC AGTGTGTTGA GGGTGCCCAG CACGTACCTT GCCATCCCTC GTTCTGTAGG CTCTCACTTC 002480 002481 CAGTTCCTCA GATGAGGTAC AGGGCAGGGA GGAGCTTCTC CCGTTACTGT CATCTCAGTC TAACCACATT CAGGACACTT 002560 002561 GTTTATTTTA AATAAACAGG TGAATTAAGA AAAAGTTTTT TAAGTCTTTA CCTAATCAGT CTCCAGGCTC TCTTTTTGGC 002640 002641 CTGTTCCTCC CTTCCTCCTG GCCGCCTCCC TCCCATGCCT CTCATGTGCC TCCTGCAGGG CTGGGCCCCC ACTTCTCTTG 002720 002721 GGACCTGTGC TTTGGGGCAC TCCCCGTCTT CACCTCCTTC CTTTAGCTCC ATTGATGACT TTCCCCCTTG CTGCTTCTCC 002800 002801 CATGGCTCAC CTCTTGCCCC CTGGTTCGCC ACTCTGCCCT CACTTTGTAC TCTTTGTAGA ATCTTGAGAT GACTCCTCCT 002880 002881 GTGTCCCCAG CCCTGCTCTG CAGCTGCTCC TGCTTTGTGC TGGCTCATCA GGCTCAGGCA TCCGAATGGC AGCTCCTTGG 002960 002961 CTTGCCCTGT CTCTGGTTTC TACGGATGGT CACAGGGGTC TTCGGGGTTA CCCCGCCCTC TTTCCTTCTT CCCTCATACC 003040 003041 CCTCAGTCCT TCCTTTTCAG ACCCTCCTTT CCATCCCTGT CTTCCTGCCC CCAAGCTGTG GGACCCTAAG CTCCTGCTGT 003120 003121 GAACTGTCGA CTGTGCTCTT GAAGTCTAGG TGATGATGTG TCATTGCATT GGTAGAAAGC GGCCTGCTTA CTGCTGCTTA 003200 003201 GCTGCTTCCC GAAGAGGGAA CAGACTGCTC GCTGGTGTTT AGGTCTCCAT GCCCGGCCCA GCTCTCTCCT CCTCTGCCCA 003280 003281 CCCAACAACC TCTGTGGCCC GGATGGATGT TATCAGGAAG GAGGGTGTCC AGAGCGGGGA ATTGTGTTAT AGGGAAGGTG 003360 003361 GAGCATTTGA GAGAAGGGGC ATCCGAGGCC ACCAGACTCG GAGGTAAGCT TGCCATGGAT TCACATGGGG GCCAGTCGGG 003440 003441 CAGCCCCATC CATCAGCTGT CCATCAGCTC ATAGCTGTGT CTCCGCCACA GGTTCCCATT AAGGATGTCG AGGCGGGGAA 003520 003521 TGGTGAGGAA GAGTCGGGCA TGGGTGCTGG AGAAGAAGGA GCGGCACAGG CGCCAGGGCA GGGAAGTCAG ACCTGACACC 003600 003601 CAGTACACCG GCCGCAAGCG CAAGCCCCGC TTCTAAGTCA CCACGCGGTT CTGGAAAGGC ACTTGCCTCT GCACTTTTCT 003680 003681 ATATTGTTCA GCTGACAAAG TAGTATTTTA GAAAAGTTCT AAAGTTATAA AAATGTTTTC TGCAGTAAAA AAAAAGTTCT 003760 003761 CTGggccggg cgtggtggct cacacctgta atcccagcac cttgggaggc tgaggtggga ggatcatttg aggccaggag 003840 003841 tttgagacct gcctgggcaa cataatgaaa cttcctttcc agggag |
Predicted Small Protein
Name | NONHSAT121414_smProtein_122:379 |
Length | 86 |
Molecular weight | 9467.2254 |
Aromaticity | 0.0941176470588 |
Instability index | 66.3811764706 |
Isoelectric point | 8.41375732422 |
Runs | 10 |
Runs residual | 0.0188948306595 |
Runs probability | 0.0160748984279 |
Amino acid sequence | MSGCSHAAWTPFVSPHMPLPLATPGRLSPSFLMLPSTCIWDPLPWVLWLSLPSCILILTL LGHCCRHTDMLHNFSFSRKVPSLTP |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLEEELLLLLEELLLLHHHEELLHHHHHHHHH HHHHHHHHHHHLLLLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHH LLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTT iiiiiiiiiiiiiiiiiiiiiiiii |