NONHSAT121700

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT121700

Source

NONCODE4.0

Same with

,

Classification

intronic(AS)

Length

983 nt

Genomic location

chr7+:78982726..78983708

Exon number

1

Exons

78982726..78983708

Genome context

Sequence
000001 CAACAACTCC CAGAGCTTCC AGACCCAAGA TACATTTTGG AACCCCAGGA CAATCCTGAA CTGGCACCCG CCCTGGTGTG 000080
000081 TGCCCTTTGC TGCTGCTGCT TTGGAATCAT CTCCTGCAGC TATGGCCACC ACTGCTTCAA GGCAGTGATG TTTCTCTCAG 000160
000161 GCCTGCTGTC TGGAGCTCTG GTGATCTTCC TGCTCTTTCA CAAGGAGCAG GTGCTGGAGA TACAGCTGAG ATTGGGGGTG 000240
000241 AGCACGGGCA TCACACTGGG CATTGGACTC TTCTGCAGCC TGGTCACCAT GTTGATTTGC AGTGTTGGGC TCTTCCTGAT 000320
000321 TAGTCTCCTT CTAGGTCTGA ACCTGGATGC TGGGACTCTG CTGGGCACTG AGTCCATCTA ACAACCACTT TCACTGGGTG 000400
000401 CTGGCAGGGG GTGGTGGTGG GGCTGGAACT GCTGGGAGCC CTGCTTATGC TTCAGTGGCC ATGTCCATTC ATAGTTCTGG 000480
000481 GCACAGCCCT GCTGGGTGCT ACGGTGCTGG TGGCTTGTGC TGACTTCTTC CTGGAGGGTC TGGCACTGGG CAGTTGGCTG 000560
000561 GGTCAATGCT GGCAGGCACT TCCAGCCTTG CCTCCTTTCT GCTGGTATAG CTAGATTTTA TTGAACTCCT GGCCAGCCTT 000640
000641 GGGGGCTTCT AGGGCCCTGG CCCAGTGGAA GCTCATGGCT AAGGAACATG GAGGCCATGC TAATGTGACC TTGAGCTACC 000720
000721 AGCAAAGGGG TCTCCAACTC CTTTGGATCT ATCAACAAGA GACCAAGTAG CACCAGACCG CCTCTGGGGT GGGGCTTTGT 000800
000801 GAAAGTAGCT ATAGGTGTCA GCTCCCTGCC AACACCCAGA GCCCTGCTGA CAGTCTGGCT CCAAGTTATC TCCAGAGTCT 000880
000881 TTGAGAGCAC CAACTGGAAC CAGTCCCTGA GGCCACAGTC CCCCACACTC ATCTGGACCT GGGTTCTGAT TGTGGTTCCA 000960
000961 CTGTTCCCCT CACAACACCC TCT
[back to top]

Predicted Small Protein

Name NONHSAT121700_smProtein_446:613
Length 56
Molecular weight 5987.1043
Aromaticity 0.163636363636
Instability index 48.8145454545
Isoelectric point 3.66571044922
Runs 4
Runs residual 0.0787878787879
Runs probability 0.0582935877052
Amino acid sequence MLQWPCPFIVLGTALLGATVLVACADFFLEGLALGSWLGQCWQALPALPPFCWYS
Secondary structure LLLLLLLLEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLL
PRMN LLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLL
PiMo oooooooooooTTTTTTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiii