NONHSAT121707
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT121707 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1726 nt |
Genomic location |
chr7+:79083012..79089875 |
Exon number |
3 |
Exons |
79083012..79083560,79088163..79088315,79088852..79089875 |
Genome context |
|
Sequence |
000001 GCCGGGGGCC ACTCCTGCGT GGTGCGAGTG GGAACGCGCG CGCGCGCCTG GGTGTGTGTT GTTAGCTGAT ATCCATGGCA 000080
000081 GCTGCAGTGG CAGGgtgcgt gtgcgtgtgt gtgtgtgtgt gtgtgtgtAC TAGTTCTACT GTACTGGCAG ACGGGAGGAG 000160 000161 GCAGGGGAGG AGGGGCGCGC GCGCCGGGTG GGGAGCCACG GAGGGCTTCG CCGCTGCCTC CCTCCCTCCC TCCGCAGCTT 000240 000241 GACCCGGTAG TGAAGGCAGA GAGAGAGGCA GGCTGGGTCC GCCTGGCAGC CTACGGGAGG AGGCGGGAGC CGGGAAGGAG 000320 000321 GGGAGCCTAG GCCCGGCGTG GGGAGGCCGG CAGGAAGGGC CTCGAGCCCA GTGCGGACCT TTCTTCAGCC TCTGTGCGAC 000400 000401 CGAGCCGCGC GCCAGGCTCC TGTGCGAGGA GGACGCGCTG ACTCCCTCCG ACCTGGGCTC CGATGGAGCA GAAATAGCGG 000480 000481 GACCTGGACT TGTGGCGCGC CTGGTGCCAC ATCTCGGGCT CTGCGAGCGT CCTGGCGCGG GATCCTGCCT AATGTCTTAC 000560 000561 AATAACAGAA TGCAGGAGAG CACATATCAA TGAAGAAAAG ACAAAATGTA CTTATCCATG AAGCTGAGGT TAAGAAACCA 000640 000641 GTGTCTTCAA GAGCCAGGGA CAGCACTGGG TCTGTGCAGA GTTGAGAGAT GGTGATGACA TGTGGTTTCC AGCATTCCTC 000720 000721 ACCCAGTCCA GGGACACTGT GGGTGTGCCC AGCTTAAGTC CAgtaactgg aaatacaagc ccaagttctg gagagtttga 000800 000801 gctgcagaga tatatatggg aacactttga atcttgactc attggccata accagcagag tggaaaatac aagaagagaa 000880 000881 aaaaacattg aactgcgatt ttataacatc ctttactagg cagagagaag aggaaacacc aggaaagaaa actgTATTAC 000960 000961 GATGTGAAAA CTTAATGTTG AGAAATTCAG GCATCTTGGG GTTAGTGAGG AGAAGTTTTA GGGGCTTAGA TTCTTCTAAA 001040 001041 CACATGTACA GAAATGCATA TTTCATCTGA TATCAAATGG CATTTATAGT GCTAATCTTT ACCTCAAGAC TTCACATCTT 001120 001121 TTGGTGATTG CATCTTTTAG GTTTATAGCA GCTAAGTTTG CATGAAAACA CCAGGGCTGT TTCATTTCAG TCAAGAATTA 001200 001201 ATGTTCATTG ATTGTGCTTC TGCATTTCAT GTAACTATTG TAGAATTTGT TTTAGTTTTA TGAGGGAATA ATTGTTCCAA 001280 001281 CTTCTATATA ACTCAGGAAT TTACTCTCAA ACAACACTGT CAATTAGTTA CTTATCTCTC TGGAAATGAT CTGGGAACAT 001360 001361 GGAGAGGAAA GGGAGGAAGG GGCAAAATCT GACCACTTAA ATCTAAGCAT ATTAGATCAT TTTATGCTAG AAAGTCCTGA 001440 001441 ATGATGTGAC TTTCGTTCTT GTAAAACACC TCTTTCCATA GATTCATGGC CCAAACAGTA TATAAAGAGT GGGGAAGGAA 001520 001521 CTGCATTTGC AAATAGTTCA AATCATTGCT CCATCTTAAC TACGCAGTTC ACAAAGTGTG AAGAAATGTG ATCATCTCAA 001600 001601 AAAAGATAAT GGGGAAAAAA TATGTTTTGT TCTGTGACTT TAAAGTCTTG CAATATTTTA CATAAATGAT AATGGGTGCT 001680 001681 TTAATAAGAA CTCTTGATAC TTTTGTTATT GTATTCAATA TATGCA |
Predicted Small Protein
Name | NONHSAT121707_smProtein_74:241 |
Length | 56 |
Molecular weight | 5344.1668 |
Aromaticity | 0.0363636363636 |
Instability index | 47.1581818182 |
Isoelectric point | 8.70452880859 |
Runs | 9 |
Runs residual | 0.0121212121212 |
Runs probability | 0.0408251388643 |
Amino acid sequence | MAAAVAGCVCVCVCVCVCTSSTVLADGRRQGRRGARAGWGATEGFAAASLPPSAA |
Secondary structure | LHHHHLLLEEEEEEEEEELLLEEEELLLLLLLLLLLLLLLHHHHHHHLLLLLLLL |
PRMN | LLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | i?????????????????????????????????????????????????????? |