NONHSAT121756
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT121756 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2222 nt |
Genomic location |
chr7-:80601832..80604040 |
Exon number |
1 |
Exons |
80601832..80604040 |
Genome context |
|
Sequence |
000001 AGCTAACTGC CCCTGTTCCA TTTTGTTCTT TGGCTTTTTG CAATAAATCT TGCTGCTGCT CACTGGTTGG ACCTGCCTGG 000080
000081 CCTTTATGAG CTGTAACACT CACCGCGAAG GTCTGCAGCT TTGCTCTTGA GGCCAGTTAA GACCACAAAC CCACTGGAAG 000160 000161 GAGCGAACAA CTCCAGAAGC ACTGCGTATA AGAGCTGTAA CACCCACAGT GAGGGTCTGC AGCTTCATTC CTGAAGTCAG 000240 000241 CGAGACCACA AACCCACCAG AAGCAAGAAA CTCTGGACAC ATCTGAACAT CTGAAGGAAC AAACTCTGGA CACATCATCT 000320 000321 TTAAGAACTG TATGACTCAC TGCAAGGGTC TGTGGCTTCA GTGAGACCAA TAACCCACCA ATTCTGAACA CACTAATCTT 000400 000401 TATTAATTTA TGTGGGGAAT GAGGTTAACA CTTCTAAAGT TAGATTAACG TTATGTGAGA AAATTCAAAA TATGGGATTT 000480 000481 TTTTTCACGG ATTCTTTGTT ACTCTGCTTT ATAGCAATTT CAGTAAGATA TTCTATTTGG ATAAAGGAAT CAGTTATTTG 000560 000561 AAATTTAAAA ATATAGTACT GAGTTTTGTG TTCCCCTTCC TGATTGCATG GACTCGGCTG CTGAACAAAG TTATGCATTT 000640 000641 ACTTTACTTT TGATAATTAA AATTGTGAGA TCCTCAAGGG CAGGAACAAT TTCCTTTTGA TTCCTAGCAG TAAGTTTTTG 000720 000721 CATCTTGAAG GTGTTCAATG AATATATGTT GAATGAATGC TTGTATCCTT AATTTGGAAA GTAATAAGTA TTTGTCAAAA 000800 000801 GAAAATGAAA AACAATATGC AGGAAAAATT TAGAATTAAT AGAGTATAAG GTATAAAATA CGTTAGTCAA AATAGAGATG 000880 000881 TTGTTGAAAT AAAGCTTCCA TTAAGGAAAA TAGGCTTTGG TCAGTTTTTC ATCCCACTTG AAGACAAAGA CCCCAGTGAT 000960 000961 TTGGATGGTA TTAGAAAAAA GTTTATGATA AAAATGAAAA TAGGTATTTA TATTTTAGAA TTCAAATTTA CATTATGAAG 001040 001041 TCCAGTTTTG GACAATATCT ATGAAATTAT ATTTTCAGCA TTCACATCTT GTTTTTCTTT GTACCATAAG ACTCAGAGAA 001120 001121 CAGTTCTTCG TCTTTCTTGA ATTAGTTGAC AATCTAAGAC CTTAGAACAA TGGGCTATGC AAAAAAGTAA TTCTGTTTAT 001200 001201 AAATAGAAAA AATAATCATA CCTTAAGCCT TTAGGAAAGA GAAATTTGCC AACACACGCT GTTCTCCTTT TACCTTTCCT 001280 001281 TTTTACCACG TATTTTGCTC AAACATAGTC ACTATCTAGC TCAATACTTT TACTCTTAAA TTATATACCA GGAAAATTCT 001360 001361 ATTTCAAACC TTTATCTTTA CCACTTTGTC TTCCCAGCAA CAACTATCTT TTTCCTTTAT CCATCTGCAC CCAACTCTGA 001440 001441 TGAGCTGGAG AAAAAAGACA GAGTGTTAGT GTGGAAACAA ACACAAGGGA CAGAGTGATT TATCAAGAGC ATGGATGTTA 001520 001521 TCGATGATGA TGAAAATCAA GAATAGATAA GCTCTTTCTC AATCCTTGGA TCCTCGTGGC TTTTTGTGGA AAGTTGAAAA 001600 001601 TTACATTAGA AACAAAAGTA TTTTAGAGAT GTCAAATAAA TGGTTTAAGA AAACATACAG TATATATTTA ACATAAATTT 001680 001681 TTTCCCTTGT GTAAAACAAC TCCCTAACTG TACAAATTAG TAAATATATT TAGGCCCAAA TAAATAAAAT ATAGTGAAAA 001760 001761 TAGACTAGAT AGCATGATTT AAATTCACAT GTTATTCTGA CTATCCTTAA TATTATTATT TTGTTATTTA ATGGAAATAG 001840 001841 CATTAAATGG GAGTGCAGAA ATCTAGGCTG CAGCCGACCA ACAATTTGAC TTTAAGGAAG TAATTTCAGT TTCCTGAGCC 001920 001921 TCAATTTCTT TATCTGTAAA ATAAACTCCA AGGCCACTTT TAGGAATAAA ATTCAGGACA CTTAATTCTC CAGGTGACAG 002000 002001 CTAAATTATT TGGATTGAGG ATACATGCCT GCATTTTCAG TCTGGACCTA AAGAGAGAAA CCAAAAAAAA AATATTGCAT 002080 002081 ATTATGTGTG GAAATTGATA AACAGAACCC AAGTTTATCT TTGTTGCTGT TGTTTCTGTT ATTGTTGTTC TGTTTTGTTA 002160 002161 TTTTGACGAA CTTGTACCTA GAACAAAATA AACTTTTATT TTCCTGGAAA AAAAAAAAAA AA |
Predicted Small Protein
Name | NONHSAT121756_smProtein_752:832 |
Length | 27 |
Molecular weight | 3002.4211 |
Aromaticity | 0.0769230769231 |
Instability index | 59.2076923077 |
Isoelectric point | 7.88397216797 |
Runs | 5 |
Runs residual | 0.0169946332737 |
Runs probability | 0.0466348701642 |
Amino acid sequence | MNACILNLESNKYLSKENEKQYAGKI |
Secondary structure | LLLEEELLLLLLLLLHHHHHHHHLLL |
PRMN | - |
PiMo | - |