NONHSAT121817
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT121817 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2493 nt |
Genomic location |
chr7+:86815312..86822617 |
Exon number |
3 |
Exons |
86815312..86817617,86820261..86820343,86822514..86822617 |
Genome context |
|
Sequence |
000001 CTTTTTAAGC TCCTCCCCTT TTCTTACCAT ATTTACTCCT TAGGAGTGAG AGGTTAGAAG TTCTTTGCCC CAGCTAGAGA 000080
000081 TATCATAGCA GATTTCTACT TACACCACTT CCCTGTTTCT CTCAGTAATT GTTTCCTTCC CCAGAGAAGA GTTAATACTG 000160 000161 TTTGTAATTC CTAAAGCCCC TAAAATGAAA ATGTACACAC TTATTCTTGT TCTTCTACGT AAACTATCAG GAGGAAATAA 000240 000241 aatcatgcca cataacgatt taatttttat gtttttagag acagggtcta gcttggttgt ccaggccgac atgcagtggt 000320 000321 gtgatcatag ctcactgtaa ccttaaacct gtcggctcaa gtgattctcc cacctcagcc tcctgaatag ctcggactac 000400 000401 aggcacacac caccatgtcc agctattttt tttcgtagag atgaggtctt gccatgttac ccaggttggt ctccaactcc 000480 000481 tgggctcaag tgatcttccc agcttggctt cccaatgtgc tgggattacc tgcatgagcc agcatagctg gccactcata 000560 000561 acctttcagt caacaacaga tgtcatacat agtattggtc tcacaatatt aaaatactgt atttttactt tttttctatg 000640 000641 tttagataca caaatattta ccattgtgtt acagttgcct acagtatttg gtacagtaac atgctgtaag ggtttgtagc 000720 000721 ctaggagcaa tagactgtat agatcatcta gcctacgtgt gtagtaggct gtaccatcta ggtttgtgta agtacactgt 000800 000801 gatgatccca tgacagaatc acctaatggc tcatttctca gaacatatcc ccatccttaa gtgattgatg actATATTTT 000880 000881 TATTTTGTAC AAAGATGTAC TTCTGAAAAC CTAAGTTTAA GTCAACTTTT GTGAGTTGTA TAATTTCAAA TATCTTAGCT 000960 000961 AGGTGTGTTA GAGAAATTCT GTGATAATTT TGTAGAACAA AGGCTCTGta attttctaat tttattaatt atataaatCT 001040 001041 AGAGATCTTA AGTTGGGTTT GCTTAAAGTG AAGCATACTT TTTGTTGCCT GTTTTGCATT TAGGTATTAA ACTTAGTTGT 001120 001121 ACAGTCTGTT TAATTTAGGT TACTAAATTT ATTCCCCTTA TTATAGCACT CTTAACTTCC ATTATTCCAA AGGAAAATTT 001200 001201 AATGCTGAGG AACTTTGCCT TGATGAAAAT GTGGTTTTTT AAAATACCCA GGTATAggcc aggtgtggtg gcttatgcct 001280 001281 ataatcccag tactgtggga ggccaaggca ggaggatcac ttgacgctag gagtttgaga ccagcctggg caacatagca 001360 001361 agaccccatt actacagaaa aaataaaaac caattagcca ggcatggtgg gcatgtgctt gtagtcccag ctattgggga 001440 001441 gcaagagcct gaggcaggag gatggcttga gtccaggggt tcgaggctgc agtgagctat gattatgcca ctccagcctg 001520 001521 agcaacagag caagaccttg tctaaaaata aaaTTAAATT AAAAAATCCA GTTAGAGAGG ATAAGCGTAT TTTACGAATA 001600 001601 GAGCAAAGCA AAGTCTAGAA TTGGCTTCCC TGCGCAAGAA TACCATATTA CTGTTTGGAA AAGAGAAGTT GCTACCTCTA 001680 001681 GACCAACAGT CAAGGGCCCT TCAGCCCTGG CGGGGAAAAC ATACACTATT CGTTTAAAAA ATGAAAATAA GCTGTTTAGC 001760 001761 ATTGCCAGTA TTCTTCCTAA ATAATAATCC TATCAAGACA CCCTAGAATA GAAAATGTCC TGTTTCCATG TTCTTTGTAA 001840 001841 TGTCTACCTT TTTTTAACAC TATAAATCTT AGATGGCAAG AATAACAATA TTAAGAATTA AAATTTGTTA CGATGTTTAT 001920 001921 AAAAATCTCA GGATATGTTG TTTTTTAAAA TATCTTATTT TTATAAGCTC TCACATCCAG TATGCAGTTA TTTATTCCAA 002000 002001 ATACTTTCCC TCCTTACCTC CCCCCACCTC CCTTGCTGCT TAGATGGTGG TCTGTCGGAG AATCAATGTT CTTTTTGTCT 002080 002081 ACCCATCTCC CTTCAGTCTT AATAAAAGGT CTTAAACAGT TACATGAGAA CCAAAAAAAC AACCCAACGC TTTTGGAGAA 002160 002161 TAAATCAGGA TCTGGAGTTC CAAACAGTAA TACCAATTCC AGTGTGCAGC ATGTTCAGAT AAGAGTTGCC CGCTTGGAAG 002240 002241 ATAATACAGC CATCTCTTCT AGCCCCATGG CAGCATTGCA GATTCCAGTC CAGATCACCC ATGTTTCTTC AGCAGACTCT 002320 002321 CCTGCTACCG TTGACTCAGA AACAATAACA CTAAACAGTG GAACACTACA GACATTTGAG ATTCTTCCCT CTTTCCATCT 002400 002401 ACAGCCCACT GGCACTCCAG GCACCTACCT ACTTCAAACA AGCTCAAGCC AAGGCCTTCC CCTAACTCTG ACTGCTAGTC 002480 002481 CCACAGTAAC CCT |
Predicted Small Protein
Name | NONHSAT121817_smProtein_440:718 |
Length | 93 |
Molecular weight | 10044.7956 |
Aromaticity | 0.0869565217391 |
Instability index | 49.5945652174 |
Isoelectric point | 6.77789306641 |
Runs | 18 |
Runs residual | 0.0604472943384 |
Runs probability | 0.0629747394454 |
Amino acid sequence | MRSCHVTQVGLQLLGSSDLPSLASQCAGITCMSQHSWPLITFQSTTDVIHSIGLTILKYC IFTFFLCLDTQIFTIVLQLPTVFGTVTCCKGL |
Secondary structure | LLEEEEEEELLEEELLLLLHHHHHHLLLEEEEELLLLLEEEEELLLHHHHHHHHHHHHHH HEEEEEEELLEEEEEEEEELLEEEEEEEELLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHH HHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooooooooooooooooooooooooooTTTTTT TTTTTTTTTTTTTTTiiiiiiiiiiiiiiiii |