NONHSAT121817

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT121817

Source

NONCODE4.0

Same with

,

Classification

sense

Length

2493 nt

Genomic location

chr7+:86815312..86822617

Exon number

3

Exons

86815312..86817617,86820261..86820343,86822514..86822617

Genome context

Sequence
000001 CTTTTTAAGC TCCTCCCCTT TTCTTACCAT ATTTACTCCT TAGGAGTGAG AGGTTAGAAG TTCTTTGCCC CAGCTAGAGA 000080
000081 TATCATAGCA GATTTCTACT TACACCACTT CCCTGTTTCT CTCAGTAATT GTTTCCTTCC CCAGAGAAGA GTTAATACTG 000160
000161 TTTGTAATTC CTAAAGCCCC TAAAATGAAA ATGTACACAC TTATTCTTGT TCTTCTACGT AAACTATCAG GAGGAAATAA 000240
000241 aatcatgcca cataacgatt taatttttat gtttttagag acagggtcta gcttggttgt ccaggccgac atgcagtggt 000320
000321 gtgatcatag ctcactgtaa ccttaaacct gtcggctcaa gtgattctcc cacctcagcc tcctgaatag ctcggactac 000400
000401 aggcacacac caccatgtcc agctattttt tttcgtagag atgaggtctt gccatgttac ccaggttggt ctccaactcc 000480
000481 tgggctcaag tgatcttccc agcttggctt cccaatgtgc tgggattacc tgcatgagcc agcatagctg gccactcata 000560
000561 acctttcagt caacaacaga tgtcatacat agtattggtc tcacaatatt aaaatactgt atttttactt tttttctatg 000640
000641 tttagataca caaatattta ccattgtgtt acagttgcct acagtatttg gtacagtaac atgctgtaag ggtttgtagc 000720
000721 ctaggagcaa tagactgtat agatcatcta gcctacgtgt gtagtaggct gtaccatcta ggtttgtgta agtacactgt 000800
000801 gatgatccca tgacagaatc acctaatggc tcatttctca gaacatatcc ccatccttaa gtgattgatg actATATTTT 000880
000881 TATTTTGTAC AAAGATGTAC TTCTGAAAAC CTAAGTTTAA GTCAACTTTT GTGAGTTGTA TAATTTCAAA TATCTTAGCT 000960
000961 AGGTGTGTTA GAGAAATTCT GTGATAATTT TGTAGAACAA AGGCTCTGta attttctaat tttattaatt atataaatCT 001040
001041 AGAGATCTTA AGTTGGGTTT GCTTAAAGTG AAGCATACTT TTTGTTGCCT GTTTTGCATT TAGGTATTAA ACTTAGTTGT 001120
001121 ACAGTCTGTT TAATTTAGGT TACTAAATTT ATTCCCCTTA TTATAGCACT CTTAACTTCC ATTATTCCAA AGGAAAATTT 001200
001201 AATGCTGAGG AACTTTGCCT TGATGAAAAT GTGGTTTTTT AAAATACCCA GGTATAggcc aggtgtggtg gcttatgcct 001280
001281 ataatcccag tactgtggga ggccaaggca ggaggatcac ttgacgctag gagtttgaga ccagcctggg caacatagca 001360
001361 agaccccatt actacagaaa aaataaaaac caattagcca ggcatggtgg gcatgtgctt gtagtcccag ctattgggga 001440
001441 gcaagagcct gaggcaggag gatggcttga gtccaggggt tcgaggctgc agtgagctat gattatgcca ctccagcctg 001520
001521 agcaacagag caagaccttg tctaaaaata aaaTTAAATT AAAAAATCCA GTTAGAGAGG ATAAGCGTAT TTTACGAATA 001600
001601 GAGCAAAGCA AAGTCTAGAA TTGGCTTCCC TGCGCAAGAA TACCATATTA CTGTTTGGAA AAGAGAAGTT GCTACCTCTA 001680
001681 GACCAACAGT CAAGGGCCCT TCAGCCCTGG CGGGGAAAAC ATACACTATT CGTTTAAAAA ATGAAAATAA GCTGTTTAGC 001760
001761 ATTGCCAGTA TTCTTCCTAA ATAATAATCC TATCAAGACA CCCTAGAATA GAAAATGTCC TGTTTCCATG TTCTTTGTAA 001840
001841 TGTCTACCTT TTTTTAACAC TATAAATCTT AGATGGCAAG AATAACAATA TTAAGAATTA AAATTTGTTA CGATGTTTAT 001920
001921 AAAAATCTCA GGATATGTTG TTTTTTAAAA TATCTTATTT TTATAAGCTC TCACATCCAG TATGCAGTTA TTTATTCCAA 002000
002001 ATACTTTCCC TCCTTACCTC CCCCCACCTC CCTTGCTGCT TAGATGGTGG TCTGTCGGAG AATCAATGTT CTTTTTGTCT 002080
002081 ACCCATCTCC CTTCAGTCTT AATAAAAGGT CTTAAACAGT TACATGAGAA CCAAAAAAAC AACCCAACGC TTTTGGAGAA 002160
002161 TAAATCAGGA TCTGGAGTTC CAAACAGTAA TACCAATTCC AGTGTGCAGC ATGTTCAGAT AAGAGTTGCC CGCTTGGAAG 002240
002241 ATAATACAGC CATCTCTTCT AGCCCCATGG CAGCATTGCA GATTCCAGTC CAGATCACCC ATGTTTCTTC AGCAGACTCT 002320
002321 CCTGCTACCG TTGACTCAGA AACAATAACA CTAAACAGTG GAACACTACA GACATTTGAG ATTCTTCCCT CTTTCCATCT 002400
002401 ACAGCCCACT GGCACTCCAG GCACCTACCT ACTTCAAACA AGCTCAAGCC AAGGCCTTCC CCTAACTCTG ACTGCTAGTC 002480
002481 CCACAGTAAC CCT
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Predicted Small Protein

Name NONHSAT121817_smProtein_440:718
Length 93
Molecular weight 10044.7956
Aromaticity 0.0869565217391
Instability index 49.5945652174
Isoelectric point 6.77789306641
Runs 18
Runs residual 0.0604472943384
Runs probability 0.0629747394454
Amino acid sequence MRSCHVTQVGLQLLGSSDLPSLASQCAGITCMSQHSWPLITFQSTTDVIHSIGLTILKYC
IFTFFLCLDTQIFTIVLQLPTVFGTVTCCKGL
Secondary structure LLEEEEEEELLEEELLLLLHHHHHHLLLEEEEELLLLLEEEEELLLHHHHHHHHHHHHHH
HEEEEEEELLEEEEEEEEELLEEEEEEEELLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHH
HHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLL
PiMo ooooooooooooooooooooooooooooooooooooooooooooooooooooooTTTTTT
TTTTTTTTTTTTTTTiiiiiiiiiiiiiiiii