NONHSAT121988
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT121988 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2479 nt |
Genomic location |
chr7-:92240782..92243238 |
Exon number |
1 |
Exons |
92240782..92243238 |
Genome context |
|
Sequence |
000001 ATGAACCTTT CATAAATTCG CAGTCTCAGC TTATGGTTTA TGGCCTCGAT TCTGCAAACC TAACAGGGTC ACATATGTTC 000080
000081 TCTAATGCAG TCCTTCTACC TGGTGTTTAC TTTTGTTACC TAAATAATGA GTAGGATCTT GTTTTGTTTT ATCACCAGCA 000160 000161 CACAGATTGC TATAAACTGT TACTTTGTGA ATTACATTTT TATAGAAGAT ATTTTCAGTG TCTTTACCTG AGGGTATGTC 000240 000241 TTTAGCTATG TTTTAGGGCC ATACATTTAC TCTATCAAAT GATCTTTTCT CCATCCCCCA GGCTGTGCTT ATTTCTAGTG 000320 000321 CCTTGTGCTC ACTCCTGCTC TCTACAGAGC CAGCCTGGCC TGGGCATTGT AAACAGCTTT TCCTTTTTCT CTTACTGTTT 000400 000401 TCTCTACAGT CCTTTATATT TCATACCATC TCTGCCTTAT AAGTGGTTTA GTGCTCGGTT GGCTCTAGTA ACCAGAGGAC 000480 000481 ACAGAAAGTA TCTTTTGGAA AGTTTAGCCA CCTGTGCTTT CTGACTCAGA GTGCATGCAA CAGTTAGATC ATGCAACAGT 000560 000561 TAGATTATGT TTAGGGTTAG GATTTTCAAA GAATGGAGGT TGCTGCACTC AGAAAATAAT TCAGATCATG TTTATGCATT 000640 000641 ATTAAGTTGT ACTGAATTCT TTGCAGCGTT AATGTGATAT ATGACTATCT TGAACAAGAG AAAAAACTAG GAGATGTTTC 000720 000721 TCCTGAAGAG CTTTTGGGGT TGGGAACTAT TCTTTTTTAA TTGCTGTACT ACTTAACATT GTTCTAATTC AGTAGCTTGA 000800 000801 GGAACAGGAA CATTGTTTTC TAGAGCAAGA TAATAAAGGA GATGGGCCAT ACAAATGTTT TCTACTTTCG TTGTGACAAC 000880 000881 ATTGATTAGG TGTTGTCAGT ACTATAAATG CTTGAGATAT AATGAATCCA CAGCATTCAA GGTCAGGTCT ACTCAAAGTC 000960 000961 TCACATGGAA AAGTGAGTTC TGCCTTTCCT TTGATCGAGG GTCAAAATAC AAAGACATTT TTGCTAGGGC CTACAAATTG 001040 001041 AATTTAAAAA CTCACTGCAC TGATTCATCT GAGCTTTTTG GTTAGTATTC ATGGCTAGAG TGAACATAGC TTTAGTTTTT 001120 001121 GCTGTTGTAA AAGTGTTTTC ATAAGTTCAC TCAAGAAAAA TGCAGCTGTT CTGAACTGGA ATTTTTCAGC ATTCTTTAGA 001200 001201 ATTTTAAATG AGTAGAGAGC TCAACTTTTA TTCCTAGCAT CTGCTTTTGA CTCATTTCTA GGCAGTGCCT TATGAAGAAA 001280 001281 AATTAAAGCA CAAACATTCT GGCATTCAAT CGTTGGCAGA TTATCTTCTG ATGACACAGA ATGAAAGGGC ATCTCAGCCT 001360 001361 CTCTGAACTT TGTAAAAATC TGTCCCCAGT TCTTCCATCG GTGTAGTTGT TGCATTTGAG TGAATACTCT CTTGATTTAT 001440 001441 GTATTTTATG TCCAGATTCG CCATTTCTGA AATCCAGATC CAACACAAGC AGTCTTGCCG TTAGGGCATT TTGAAGCAGA 001520 001521 TAGTAGAGTA AGAACTTAGT GACTACAGCT TATTCTTCTG TAACATATGG TTTCAAACAT CTTTGCCAAA AGCTAAGCAG 001600 001601 TGGTGAACTG AAAAGGGCAT ATTGCCCCAA GGTTACACTG AAGCAGCTCA TAGCAAGTTA AAATATTGTG ACAGATTTGA 001680 001681 AATCATGTTT GAATTTCATA GTAGGACCAG TACAAAAATG CCCCTGCTAG TTTCTGTTTG ATGTTCTGGT TCTGGCGGCT 001760 001761 CAGGCATTTT GGGAACTGTT GCACAGGGTG GAGTCAAAAC AACCTACATA TAACAAGAGA ATCTAGAGAA ACTTGTCCAT 001840 001841 TTACCTTTCA TAAGAAATCC CATGGCAAAG GGTAATAAAA AGGACCTAAT CTTAAAAATA CAATTTCTAA GCACTTGTAA 001920 001921 GAACCCAGTG GGTTGGAGCC TCCCACTTTG TCCCTCCTTT GAAGTGGATG GGAACTCAAG GTGCAAAGAA CCTGTTTTGG 002000 002001 AAGAAAGCTT GGGGCCATTT CAGCCCCCTG TATTCTCATG ATTTTCTCTC AGGAAGCACA CACTGTGAAT GGCAGACTTT 002080 002081 TCATTTAGCC CCAGGTGACT TACTAAAAAT AGTTGAAAAT TATTCACCTA AGAATAGAAT CTCAGCATTG TGTTAAATAA 002160 002161 AAATGAAAGC TTTAGAAGGC ATGAGATGTT CCTATCTTAA ATAAAGCATG TTTCTTTTCT ATAGAGAAAT GTATAGTTTG 002240 002241 ACTCTCCAGA ATGTACTATC CATCTTGATG AGAAAACTCT TAAATAGTAC CAAACATTTT GAACTTTAAA TTATGTATTT 002320 002321 AAAGTGAGTG TTTAAGAAAC TGTAGCTGCT TCTTTTACAA GTGGTGCCTA TTAAAGTCAG TAATGGCCAT TATTGTTCCA 002400 002401 TTGTGGAGAT TAAATTATGT AAGCTTCCTA ATATCATAAA CATATTAAAA TTCTTCTAAA AAAAAAAAAA AAAAAAAAA |
Predicted Small Protein
Name | NONHSAT121988_smProtein_278:523 |
Length | 82 |
Molecular weight | 9207.8067 |
Aromaticity | 0.185185185185 |
Instability index | 51.1888888889 |
Isoelectric point | 9.19525146484 |
Runs | 15 |
Runs residual | 0.0430054778841 |
Runs probability | 0.0367131837721 |
Amino acid sequence | MIFSPSPRLCLFLVPCAHSCSLQSQPGLGIVNSFSFFSYCFLYSPLYFIPSLPYKWFSAR LALVTRGHRKYLLESLATCAF |
Secondary structure | LEELLLLLEEEEELLLLLLLLLLLLLLLLEEELLLHHHHHHHHLLLEELLLLLHHHHHHH HHHHHHLHHHHHHHHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLL LLLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTTTTiii iiiiiiiiiiiiiiiiiiiii |