NONHSAT122186

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT122186

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

6213 nt

Genomic location

chr7+:97881470..97887682

Exon number

1

Exons

97881470..97887682

Genome context

Sequence
000001 TGGTAGGTCC TCGGCGTCCG GGAGGAGCGG ACCGGCCCTC CCGGGGACCG GGCAAGAGGG TGGGCCGGAA GCGGCATCAG 000080
000081 GCCCCGTGCC CATTGGCCAG CCTCGCCAGG ACGCTGCGAC CTGGGACGTG CGATTGGCTG CGGTGCGCCG CGTCGGTGCT 000160
000161 GGCTTCGAGG TCGCGCGCCC GCCCACTTCC GGGGTCGCGC CAGGTCAGGA GTCCAGAGTC GGCTGAAGCG AGTTGCCGCG 000240
000241 TTCTCTCTGG CGGCGCGACA CCGGCCCGTG GACCGCCCGG CCGCCCTCCA GGACCCGGTC TGCAGGAGCG GAGAGGGCGG 000320
000321 TGTGGACACC GCCTGCAGGC GAGGAGAAGG GGTGGCGGAG AGGGTACCTG GGTGCGTGGC TGTGCGGCGT CAGGAGGAGC 000400
000401 AGGGTGTGGG CGCCCGGCCT GGGGCGTGGA GAGGACGCAG GGAACAGGTG TCTTCCTGGT ATCCATCGAA CTGAAACGTA 000480
000481 GCCCTTGAGC ACACACTACA CTTAAAGCTT TACTCTTTCG AGGAGGAGTC CTGGAAGCAT ATGTGATTTT GTGACTATAG 000560
000561 CATGGTGTGG TGTCAGTAAC AGGCCCTGGA TTGCTCAAAC TCTATTGTCA GTGACAAAAC CCAGTGTAAG CTGGCCtaat 000640
000641 atattaatag taatatgcga gtcctcccgg ggtggcgggc actgacgtaa gtgctttact tgggtcttct catttcatcc 000720
000721 tcccagcaac ccaaagagct ggcggcgtca ttcccatttt acaaatgcga acacgggctc agagatggag cgactcacgt 000800
000801 tgtaagcgat ggaactggga tttgaaAACA CTGTATCCCG CCTGGCAGAA AACTGGCAAG GTTAGGATGG AGAAAGGAGA 000880
000881 AAAAAGAAAG ATGTCggcca ggtgcggcgg ttcatacctg taatcccagc actttgggag gccaaggcgg gcggatcact 000960
000961 tgaggtcagg ggtttgagac cagcctggcc aagatggtga aaccccgtct ctagtaaaaa tgcaaaatta gccaggggtg 001040
001041 gtggcgcatg cctgtaatct cagctactcg ggagactgag gcaggaaaat cgcttgaact ggggaggtgg aggttgcagt 001120
001121 gagctgagat cgtgccactg tgccaccgca ctacagcctg ggcgacaaga gcaaaactcc ttctcaaaaa agaaaaaaaa 001200
001201 GGGCATCTGA TGGAAGGCTA GATACTACCC GACATTGAGC TAAACCAATG TCACCTGGTT GGACCTAGGG ACCTATTCCT 001280
001281 GCTCCCCCTC TAGTTCTGTC TCATTTCTGG GGTTGCACAC AGGCTTTTCC TGGGCCTTCA TGTTTGGGGA AGCCCCACAC 001360
001361 AGGCCAGCTC CAGTGGAAGA AAACGCCCCC AGAAGCCTCT TGTTCACCCC GGATGGCTCT GTGGAGTCCT GTGTCTGACC 001440
001441 CTGACTTTAG CTTGGGCCTG AGGGACTGGC ATTTGTGGAC TTGGTCTGGA GATGTGGGCA GAGCCCCCCT CAAGCATAAG 001520
001521 GGCTCAGCCA GGCACAGGGG GTGGCTCCTC AGAGGAAGAT CAGGGTGCTA TTAGCAGAAG GACGATGAGT Gggccgggcg 001600
001601 cagtggttca cgcctgtaat cccagccctt tgggaggccg aggcgggtgg atcatgaggt caggagatga gaccatcctg 001680
001681 gctaacatgg tgaaacaccg tctctactaa aaacacaaaa aattagccgg gcgtggtggc gggcgcctgt agtcccagct 001760
001761 actcgggagg ctgaggcagg ataatgaggt gaacccagga ggcggagctt gcagtgagct gagattgtgc cactacactc 001840
001841 cagcctgggc aacagagcaa aactctgtct caaaaaaaaa aaaaaaaaaa aaaaaGGAGG ATGAGTGGTC GCTAGACTGC 001920
001921 TGgagaaaca gtctagaggt agggagccct gggttctgtc ctgcctgtga cactctgtag ccatttatct cctctttagc 002000
002001 tttagtttcc acattaaaag aggcattgaa aaaaaatgaa aaagaggcat tgaattagga gctttctgtg gccccttgca 002080
002081 gttttCATGT GTGGTGACAA AGTTCAATAT AGTTTTCCTG AATTCAGGGG CTTGGGGACC CATGTCCCCC TATCCCGAGt 002160
002161 tctttttttt tttttttttt tttgagaggg agtctcactc tgtcacccag gctgcagtgc agtggtgaga tctcagctca 002240
002241 ctgcaacctc cacctcccag gttcaagcga ttctcctttc tcagcctcct gagtagctgg gactacaggt gtgtgccacc 002320
002321 acgccaggct aattttttta tttttagtag agacaggatc tcaccatgtt ggccaggctg gtcttgaact cctgacctca 002400
002401 ggtaatccac ccatctcagc ctcccaaagt gctgggatta taggcgtgag ccagcatgcc cggccaaaag tttgctttct 002480
002481 tttgagtctg tgatcagcct ttcactgaat acacaattta catgtgagag tgggtagagg aatagtcaca tatgccttac 002560
002561 tcactgtctg gctcagtgaa tctgcatttt gtataaacaa taggacagag gaagaaatca catatgcatt tgtcttcagt 002640
002641 gagcggaggg ctgactttct gcattgtacc tgtgaagata agctatcaat ttacattgcc agggaaaatt catcagaact 002720
002721 gttttagggc aaagatcttg aggcccgaaa ggaatttgct tgtggagaaa ttgtgagggg ggtatgtagc tcttttgaac 002800
002801 tttctagcta tcttattgaa gaataaaacg ggaggcaggt ttgtctgatg cgaccctcag cttgactttt ctctttggcg 002880
002881 tagtgatctt ggggtcccga gatttatttt cctttcacaG TAGGATACAT TGATCAGGTC AGTGCCACAG TACAAGGgtc 002960
002961 agaagtgttt gaacccgagc gactccatct tgaacagggg ctgggtaaaa tgaggctgag aactgctggg ctccatcccc 003040
003041 aggaggttgg gcattcttgg tcacaggatg aaataggagg tcagcaggtt tggtatcaca agatacaggt cacaaagccc 003120
003121 ctgctgatag aagaggatgc ggtaaagaag ccagccaaaa ccacgatggt gatgaaagtg acttctggtt gtcctcaccg 003200
003201 ctcattatac tctaattata atacattagc atgctaaaag acactcctac cggtgctgtg acagtttata gatgccatgg 003280
003281 caacgtcagg aagttaccct atatggtctg aaaaggaggg gaaaccttag ttccaggaat tgccctctgc tttcctggaa 003360
003361 aactcatgaa taatccaccc cttgtttacc atagaaccaa gaaataacta taagtatact cagtccagca gctcatgctg 003440
003441 ctgctctggc tgtggagtag tcattctttt attcctttac tttcttttat tttttattta ttattattat tattatctta 003520
003521 tttgagatgg agtctctgtc gcccaggctg gagtgcagtg gcgcggtctt ggctcactgc aacctccgcc tcctgggttc 003600
003601 aagtgattct cctgcctcag cctcctgagt agctgggatt acaggcgcat gccagcatgc ccggctgatt tttatatttt 003680
003681 taatagagat ggggtttcac catgttggcc aggctggcct cgaactcctg acctcaggtg atccgctcac ctcggcctcc 003760
003761 caaagtgctg ggattacagg cgtgagccac cacgcctggc ctggagtagt cttttattcc tttactttat tatcattatt 003840
003841 atttttgaga tagaatcttg ctctgttgcc cagactggag tgcagtggca ctatctcagc tcactgcaac ctctacctcc 003920
003921 cggattcaag caattctcct gcctcaacct cctgagtagc tgggattaca ggtgcacgcc accacaccca gctaattttt 004000
004001 gtatttttag tagagacgtg gtttcaccat gttggccagg atgttcttga actcttgacc tcaagtgatc cgcccacctt 004080
004081 ggcttcccaa agtgctggga ttacaggtgt aaaccactgc acccagcctg ttcatttact ttcttaataa gcttgctttc 004160
004161 actttatgga cttgccccaa actctttatt atgtgaggtc caagaaccct ctcttggggt ctggatcgag gcccctttgc 004240
004241 agtaTAACAA GGATCAGGAG TAGACAAAGA AAAGTCCAGG TCCCTGGCTC AACAGAATCT ACTCTCCAGC AAACAAGATA 004320
004321 AAACTTGCTA TCTCCCTTTA ATTGAAGTCC CTAATGTTTA ATGGAAGTCC CAGTAGGCAT CCATATGGTC TCTGTATTTA 004400
004401 CCAGCGGCTG GAAGCTCGCT TTGTACGTTA CTCTGCACAA CACCACATGA CTGCTCCTGA CAGTAATTTG AGGAGCTTCT 004480
004481 GGTGATGGTA AACTTGCACA GTATGTTCAA AACCAACCTA CAATCTGTGT TACGCCTGTA TGTTTCACAA GGAACATGTC 004560
004561 TGTATATTTC GACTCCAGAA ATATAATTTG TCAAACCAAT TATCGTACCT AAAATGTCTT GTGCTGTGTT TTATAATAAT 004640
004641 TTACGCAAAT GAGTTTCATT TCATGTAATT AACCTATTCC AGTGTGATGT TTCTCACCCC AACTTTGCCA GCTCTCTTTC 004720
004721 CAGCACAGAA ACAGATTCCG CTAACCATCG CCAAAGGCAG GACCTGTGAA CAGCTGAAGC ATCTCCTGGT CTCTGCTCTG 004800
004801 CTGAGCCTTC CATAGCAAAT CCCAGGCAGA CAGGGTCCTG AGGATTGATG GCACCTGAGC AGCAGTTGTG ACCTTCCGCA 004880
004881 ACATTCTCTT ATGCCTCTAT AAAAGCCAGT AATCTcccgg catgatggct catgcctata acgtcagagt tttggaaagc 004960
004961 ggaggtggga ggatcacttc aggtcaggag tttgagacca gcctgggcat caaagtgagc ctctatccct acaaaacatt 005040
005041 tttttaatta gccagatgtg gtagtgcgtg tctgtagtcc cagttactag ggaggctgag gcaagaggat cgcttaagcc 005120
005121 taggaggtcg aagctgcagc gacctgtgat tgcaccactg cactgcagcc taggtgatgg agcaagaccc tgtctcaaaa 005200
005201 gaaaaaagaa Gggccgggca tggtggctca ctcctgtaat cccagcagtt tgggaggccg aggcaggcag atcacgaggt 005280
005281 caggagattg agaccatcct ggccaacacg gtgaaaccct gtctctacta aaaataaaaa aaatcagctg ggcgtggtgg 005360
005361 cacgcgcctg tagtcccagc tactcggtag ggcgagacag gagaatcgct tgaacccggg aagcggaggt tgcagtgagc 005440
005441 cgatatcgcg ccactgcact ccagcctggg tgacaaggca agactctgtc tcaaaaaaaa aaaaaaaaag aaagaaaaaa 005520
005521 gaAGAAAGAa gaaaaagaaa caaatggtca ataaacttat gaagaagtgc tcaactacag cgataagcag gaaaatgcaa 005600
005601 attaaaccca caatgagttg ccTGCCAGAC AGGCTAAGGG AGTAGAAGTA CGAGCTGGTG CCATCACTGG GGAAATCAGT 005680
005681 GACATGACCT CATAGAGCTG AAGCTAAGAT TGTGCTGTGG CCCAGCAGTG ATTTAGGTGC TGTACGTACA CACCTTACCA 005760
005761 GCATTCTCTA TGTAACAACA GCcccaggtg tccatctgta gtggaatgca tgatcagtgt gatggagtca cattaggttg 005840
005841 ctgcaaaagg acttgtggtt ttggccatta aaagtaatga cagggtgggt gcgatggctc acaccagtta tcccaacgct 005920
005921 ttgggaggcc gaggtgggca gatcacttga ggtcaggagt ttgagaccag cctggccaaa atggcaaaac tctctgctca 006000
006001 aaatacaaaa attagctggg catggtggca cacacctgta atcccatcta ctcaggaggc tgaggcagga aaattgcttg 006080
006081 aacccaggag gtggaggttg cagtgagatg agatcatgca actacactcc agcctgggca acagagtgag actccgtctc 006160
006161 aaaaaaaaag aaaaaagaaa aaaagaaaaa aggccaggca tagtagctca cgc
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Predicted Small Protein

Name NONHSAT122186_smProtein_3434:3631
Length 66
Molecular weight 7589.0149
Aromaticity 0.169230769231
Instability index 66.8847692308
Isoelectric point 9.30059814453
Runs 8
Runs residual 0.0272115384615
Runs probability 0.0308249425896
Amino acid sequence MLLLWLWSSHSFIPLLSFIFYLLLLLLSYLRWSLCRPGWSAVARSWLTATSASWVQVILL
PQPPE
Secondary structure LHHHHHHHHHLLHHHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHEEEL
LLLLL
PRMN LLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLL
LLLLL
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