NONHSAT122530
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT122530 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS) |
Length |
1096 nt |
Genomic location |
chr7+:102613969..102629303 |
Exon number |
4 |
Exons |
102613969..102614218,102618828..102618967,102628480..102628679,102628822..102629303 |
Genome context |
|
Sequence |
000001 CCACGCGTCC GCCCAGGCGC TCATTAAAAC AGCAGGTTGC TCCACACTGC CTCGTGTTGT CTGTTGGCAC ACTCTCAAGA 000080
000081 GTTTGAACGG ATACAAGAAT CTTTCATCTG GTGCCGAAAC CCGGGAGGGG CTCCGGTCTT CGTCCCCCGT GGACCTACCC 000160 000161 CTCCGCCCCA GAAAGCAGGC CACAGCAGCC GGACAAAGGA AGCTCCTCAG CCTCCAGTTG CTTCTCTGTG CATGCACATC 000240 000241 AGTCACTGAT CTCACCTACT GGCCCAGTCC CAAGGCGCAA GGCCACTTGT GCCAGCAGTG TGAGTCAGCA AGATAGCAGA 000320 000321 AGCAGGAAGA GAGCCGGCCA GAAGACACCT ACTCTGACTG GGAGACACGT ACCCCTGAAG ATTGAGAAAG AGGCCATCCA 000400 000401 GGGAGTGAAG ATGGAATGAG AAGAACAGAG AAACAATGAC AGAGTCCTTA CAAACACCAT GATACAAGAA GGCAATGGGG 000480 000481 ATATGTTATC CTAAAGGAAT CCTAAAAGAA GTGATCAAAA AGGTGAACAG AAAACCAAGT GGGAGTACTG TCACTGAGGA 000560 000561 TGAGTTTCCA GAGAGAATTA ATGCTGAAGA AGCTATTGCA GACACTGCTG AGTATGAAGA ACTAATTGGA GAAGGAAGCC 000640 000641 GTTGTATAGC AGATGCAGAG CAGCAGCAAA AATGGTAATG AAAATAGAAG ATAAATTAGA AAATTTGGAA AAACCCAAAC 000720 000721 AGATCAGCCA TATTGAAGGG AAAAAGAAAA ACAAAACAAA GTGGGAGGGC AGAAATGTAG AACGGTATAC ACTCTTTTAA 000800 000801 CCCCAAGGAT GAATGTAGCC AAGAACACAG TGGGGACTTA GGAGTCTCAG CACAGAGCAT TCTCTACTCC CTACTGCTCA 000880 000881 GGCAAAGAAC TCCTTCATCA TGCAGAACCA AAACTGGTGT AGAGTCTTAA ATGACCTGGG TATCTCTACG CAGAAGAAAG 000960 000961 CGCTTTCCAT GTAAAAGGAT TAACTTGAAC CTGGGTGCTC AAGGGACACC CTAGGCTGCT TATCCCACTG ATTCTGATCT 001040 001041 GACTGTGTTA AGTAATAAAT CATGTGGTTA CATATTCACA TTAAAAAAAA AAAAAA |
Predicted Small Protein
Name | NONHSAT122530_smProtein_671:799 |
Length | 43 |
Molecular weight | 5117.9445 |
Aromaticity | 0.0714285714286 |
Instability index | 46.2404761905 |
Isoelectric point | 9.63079833984 |
Runs | 8 |
Runs residual | 0.0143158529234 |
Runs probability | 0.0465355060944 |
Amino acid sequence | MVMKIEDKLENLEKPKQISHIEGKKKNKTKWEGRNVERYTLF |
Secondary structure | LEEEEHHHHHHLLLLLLEEEEELLLLLLLLLLLLLEEEEEEL |
PRMN | - |
PiMo | - |