NONHSAT122534
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT122534 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2238 nt |
Genomic location |
chr7+:102736174..102739361 |
Exon number |
2 |
Exons |
102736174..102737795,102738746..102739361 |
Genome context |
|
Sequence |
000001 atatacacca tggaatacta tgcagccata aaaaatgatg agttcatgtc ctttgtaggg acatggacaa aattggaaat 000080
000081 catcattctc agtaaactat cgcaagaaca aaaaaccaaa cactgtatat tctcactcat aggtgggaat tgaacaatga 000160 000161 gaacacatgg acacaggaag gggaacatca cactctgggg actgttgtgg ggtgggggga ggggggaggg atagcattgg 000240 000241 gagatatacc taatgctaga tgacgagtta gtgggtgcag tgcaccagca tggcacaagt atacatatgt aactaacctg 000320 000321 cacattgtgc acatgtaccc taaaacttaa gaataataat taataaaTTA AAAAGAGGCA TTCTATTTGA GTCTTGTTAT 000400 000401 TACTGACTTT TCAGTTATAA GTGATAAGAA TGCTGATATT TTAGCTAGTC ACCCATTAGA TAACATTTAT TTGCTTATTA 000480 000481 TTTATATCAT Tgctgggcat ggtggctcat tgcctgtaat cctagttact ttgggaggcc aaagtgagag gattgcttga 000560 000561 ggccaggagt tcaagaccag cttcagcaat atagtgagac ccccatctcA ATCAATCAAC CGATCTATCA GTTTTTATCA 000640 000641 CTGTGCTTAT TTATATGATT GTAAAACACT TTCACATTAA AAGATAACCT CAAAAATTCA TGGTAGCTTA CCAAAAGGGG 000720 000721 CCATATTGTT ATTTATTTAG TCTTGGTAAC CAAACAGTTC CAAAATTTTT ACTGTTTAAG TAGAAATGAG CTGAGCTTTG 000800 000801 AGAGATTTTT TTGTTGTTGT TTTAAAGATT ATATTTCTTT ATTTCTTTTT TGTCGGGGGT GAAGATGGGG TCTAAgggtc 000880 000881 tcactatatt gcccaggctg gagtgcagtg gctgttcaca ggcacaatca tagcttacta catccttgaa cttgaacatc 000960 000961 cttgagatgg gaaggctcaa gagatcctcc cccgctcagc ttcccaagta cctaggacta caggccgaca ccatcatgcc 001040 001041 tggcCATACT TCACTTACCA GTAATCATAA TGAAGATCGT GTATTTAACA GATGTTAAGC TTACCAACTG TTCAGATGTG 001120 001121 CATGTGAATT GGGGGTAGAT TGTGAAGACA TTTGCAATAT TCTATCTCCC TGACATTATA ATTGGGAAAA ATTAGGTTTA 001200 001201 AATAACCGTG TGATAGAAAA CCTGTATCTC TGTGATAAGT TCTCTAAGAG TGGTACAAGA CATTTGCAAT ATTCTCTCTA 001280 001281 TCTCCCTAAC GATGTAATTG GAAAAATGAG GTTTAAATAA CACTGTTCTa tgataggttc tctaagagtg ctgccaagtg 001360 001361 ttataagagt tcagaatgag acctttaaag tagaatgaac ggagaaggtt tcctggagta gagagaattt gagccaggcc 001440 001441 tggaagctta ggcaggactt taacaggaag acatggtgag agaacagcat gcctgagaga gaaaaTTCAT GCTTGCCAGT 001520 001521 CTGAGATAAG CCAGTATCAT CTTCTTTCAG GTGCAAGTTT TGAAACTGCT TTTGAATTTG TCTGAAAATC CAGCCATGAC 001600 001601 AGAAGGACTT CTCCGTGCCC AAGTGGATTC ATCATTCCTT TCCCTTTATG ACAGCCACGT AGCAAAGGAG ATTCTTCTTC 001680 001681 GAGTACTTAC GCTATTTCAG AATATAAAGA ACTGCCTCAA AATAGAAGGC CATTTAGCTG TGCAGCCTAC TTTCACTGAA 001760 001761 GGTTCATTGT TTTTCCTGTT ACATGGAGAA GAATGTGCCC AGAAAATAAG AGCTTTAGTT GATCACCATG ATGCAGAGGT 001840 001841 GAAGGAAAAG GTTGTAACAA TAATACCCAA AATCTGATTG GTCATATTTT TCCAAAGAGT AATGCAGTCT GGATATAAAC 001920 001921 GTATTTTCTG TCTTCCTTAT AAGGGGATTC TCCCAGCTGC TAAATTTAAA CAGTAAATAT CACATTTTGT CATTAACACA 002000 002001 GCTATAACTT GCCGTGGTTC TCAGATTTAT TTTGGACTAT TTTGATGCCA AGTGAATATA AGAGCTTGTA CTGAAACCAT 002080 002081 TTATTTCTTT CTATTTTGCT ATTTGCAAAT GCTTGTTATC TTCCCTACAT GAAGTGGCAG TAACCTTTTT CACATTTAAG 002160 002161 CTACCCTTCT ACCTTTTGAA GTGATTTGCA GTTACTCATC TGAGACAGCA TCAGTATTTG ACTAAATCAT TGTTTCAC |
Predicted Small Protein
Name | NONHSAT122534_smProtein_1595:1876 |
Length | 94 |
Molecular weight | 10499.1492 |
Aromaticity | 0.0645161290323 |
Instability index | 40.6279569892 |
Isoelectric point | 6.17315673828 |
Runs | 15 |
Runs residual | 0.0303663878933 |
Runs probability | 0.02883471707 |
Amino acid sequence | MTEGLLRAQVDSSFLSLYDSHVAKEILLRVLTLFQNIKNCLKIEGHLAVQPTFTEGSLFF LLHGEECAQKIRALVDHHDAEVKEKVVTIIPKI |
Secondary structure | LLHHHHHHHHLHHHHLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLHHHH HLLLHHHHHHHHHHHHLLHHHHHHLEEEEEELL |
PRMN | - |
PiMo | - |