NONHSAT122633

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT122633

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

4810 nt

Genomic location

chr7+:105548099..105564604

Exon number

15

Exons

105548099..105548507,105550673..105550920,105550955..105550971,105551485..105551687,105552929..105553086,105553098..105553124,105553144..105553163,105555279..105555650,105559225..105560263,105560470..105560489,105560497..105561187,105561943..105562740,105563408..105563655,105563669..105563692,105564069..105564604

Genome context

Sequence
000001 GGTCACTGAG CTCATTATCC CTAAGCAGCG TTCAAACCCA GGCAGTCAGG CAGGCAGGCA GGCAGGCTGG CTCTGGAGCC 000080
000081 TGTGCCACTG CCCTCTCTGG TAACTGATTA GGACCAAATA TCCCTGTGAT AGTCCTTCAT AAAGGCTGTC CTTGACAGCT 000160
000161 GAGCCTTTGA CAAATCTTGG GCAGCAGTGA GTTTAAGGAA ATGTGTGAAT CCTGATGAGT TCCTGAGGGG CCAACATTCT 000240
000241 GGAGGGCTAG TTACTGTGGA GCCGTATGCT TTACCCGTGG GCTGAGATGG AATAGGACCA ACAGATTTCC GCTCAGGGTC 000320
000321 CCAGTATGGG CTCTGGCTTG AACTGAAGGT GATCCATGAG CTGGGTTCAG AAAAGGGGGT AGGCAAATAG GGAAGCAAGG 000400
000401 CCAAAGTGCA GAGCTGTGAT CACTTGAGGG TGTCATGTCA ACCTTGTCTC ATGCACCAGC TGAATTCAGT GACACTAACA 000480
000481 TCCTGGATCC TGCAGATGAG AGTATTATGA CTGCACTACC AGGGAGGCTG CCCAGGGCTG GAGATTGCTC TGCTCCAGAG 000560
000561 GTGCTTGGTT TGCAGTGTGG GCGGACTCAA CCTGAGCGAA AGCCACACAA AAGCGCCTTG AGCTGGAGCC CCATGCTAGT 000640
000641 GTTGGTTCCA CCAGTGGCTC TTTTTGCCCA GGCTTCCTGA GGAACCTCAG ATTTGAAAGA AGAGTGAATG GAAGTCAAAT 000720
000721 GTGGAAACCA CTCAAATGTC CATCAACTGA TGAATGAATA AACAAATCAT GGTATATCCA TACAAGGAAT ATTATTCACC 000800
000801 CATAAAAAGG AATGAAGTCT TAATACACCT ACAACTGGAT GAACATTGAA AACATTATGC TATCCATTCT GCTTCAGACC 000880
000881 GGAAAGGAGA AACAGTCTAA ACTGCATGAA AGTCCTGGTA CTGCTGTATC TCGTACTATA AGTTCAGTTT TCTCCCTTCA 000960
000961 CCTGAGGGTA AGTTGAAGAA TAACTTCATA AGCCAGGGAG AGATACGTTT GGATCAGGAG TTAGTGATAA CAGGTTAATC 001040
001041 CTTTTTGCGC TCATGCTCAG ATTTATAATG ATGTAGATAT ACGTTTTAAA GAAAATTTAT GCTGGTGGTT TGCAGAAAGT 001120
001121 TGACATATAT CCTAGGGTTT CCTTGTCAGA GGGCAGCAGG GTCCCCATGG GTTCACATCG TTGCCTGGAC AAGGAGTCTT 001200
001201 TGTACCCTAG TGGTGCCTGG GTTGTCGCAG GGATGGGGTA ACTCATTTAT TCACACTCTT TCTCCTTTCC TGTTTCCTTC 001280
001281 AAAGATACCC TGGTCCTAGT TGACTCTACT TTACTGTTCA AAATTCAGCT CAACATATGT CAAGCTGTAC GTTCTTAAAC 001360
001361 TCAAGGAAAC AGAAAGGTTA TAACCCCGTG GTTTCCAAGC CTGGCTTTTC ATCAGAGTCT CTTGGTGAAC TTTTAGAAAA 001440
001441 TCCATATTCT TGCCTCCGAT GTTGTAAAGC TTTGCCCCGT GTTTTCTTTG AAGAGTTTTA TCATTTTTAG CTCTTGTGTT 001520
001521 TAAGTCTTTG ATGCATTTTC AGTTAATTTT TGCATATGTT GTTAGTTAAG GATCCAACTT CATTATTTTG CATGTGGATA 001600
001601 TTCAGATTTT CTAGCACTAT TTGTTTAAAA GACTGTCTTT TCCCCCATTG AATGGTCTTG CATTCTTGTC AAAAATAATT 001680
001681 TGACTCTTGT CATCTCACTC TTGAATCACA AGTCCTCTAG CCTCCAGATG TGGCTTCCCA TTCAGTCTGT GTATTGTAGT 001760
001761 TACAGCCCTT ATTTTGAAAT AAACTTGATC ATATCTCTCT CGGGCTTAAA AAGTCTTCAG TGGTTTTCCT GGCACCTTCA 001840
001841 GAATAAAATA AAGCCCTTCA GCATGGGATA CCTGCCCCTT CCTAGGGAGG CCTCACTTCT CACGCCCCCC TGCTTCATCT 001920
001921 TGCATGCCTC AGACTCTGGT GGTCCGTCTA CTGGTTGATC ATAGTGCTCT TTTATGCTAT TGGACATGTT ACTCCTGCTG 002000
002001 CCAGAAATAT CTGCCTCCCA CCTAACTCCC GTTCACCTAA CTCCCATTCA CCTACTTGCT GCTCTACTCA GTATGTCTCC 002080
002081 TCTGTCTACC ACAACCTGCT CCCCATTATG AGAAATGTGC CCTTCTTTGA ATGCCCTTAT CTTATTTCTT TCATAGAACA 002160
002161 TAATTGCTCT GTGTTGGAAT GATAGATTTA TCTGCTTGTC TCCTCTCTAG ATTGTGAGAT CCATGAGAGC CCAGAAAATA 002240
002241 TCTTAGGATC CCTAGTGCTT AGCACAGAGC TTGGCATATG GAGGTAAGCA AAAAGATTTT TTAAATCCAG TTGTCCATCC 002320
002321 ACTCATCCAT TCAATATGAA TGAGAGAACA GCCCTTTTTT AAAGAGGGAT GGCCTTTTCT TAAAAGACCT CTATCTTGAG 002400
002401 GCATTATTTT CCCTTATTCA AGTCCCAGTT TATTAGGTCC TGGTACTTAA TGGTGATAAA AGGGCATTAT TATTGAAAGG 002480
002481 TTGGGTATGT CAGGCCATGG GAAGTAAGAC TGGTTTTCAT CTTCTTAGAG TTTGGGATAT ATGGATGAAT TGAGTGAAAT 002560
002561 GAGGATTTTA GTGAGTATCT CTACTAGGTT CCTGACAGGG ATGGTTTCTC CAGGGATTCA ACTGAATCTT ATAGGTAGAT 002640
002641 CTGATCTGGT GAAAGATAAG GTATAAATTG GCCTGTCAAC AGGACATTCG TACTGGTAGT TATTACTACC ATGATGGCTT 002720
002721 TAAGAGATTT TGGGGGCTGG CAAGAAGTAG AGTAAATGTA GCAGAACAGA TGGATGTTAT AGGGAAAATA TAGCTGTAAG 002800
002801 GAACAGTGAG AGCTTAGTGA TGGTGGCAGT AGAGCATAAA AGACAAATTA TCTTTAACTT TGGCTTTGCA AAAATTGGGG 002880
002881 TATAAAGTGG GGCTATATTA CTGAAGCAGT CCGATTAGGA GGATTCATAA AAATGAAATG CATTTCATAT GCACATCTGG 002960
002961 GCAGCTATAG CCACTGTAGG TTTCTTGTAG GTCTGATAGA AAATGAGCCC TGTTGGTGAA TACCTTAGCC AATATGATGA 003040
003041 ATACCTTAGC CAATATGATG AATAGTAGTG AAAGGCTGTA CCTTGGGAGG CTCAGGATTA TACTGATGCA CCCATCACTC 003120
003121 ACAGTTACTA GACATGTGGC AGAGACTGAA TAAAGGGTTG ACCCAGGGAC ACTCCTTGAA TATGTCCCCT TTTTTTGATC 003200
003201 AGCATTAATG GGTGCAGCAC ACCAACATGG CACATGTATA TATATGTAAC AAACCTGCAC GTTGTGCACA TGTACCGTAA 003280
003281 AACTTAAAAT ATAGTAAAAA GAAAAAAAAA AAGAATGGAA TGCCTGATTC TGCATCCCTC TAGATGGGAT CAACAGGATC 003360
003361 AAAACATGAC CTTGATGGCC AAGCCAAGTT CTCTTTTTCC CAAAGGGTTT AAATCTGCCC TATTTAATAT GGTAGCCGTA 003440
003441 GCCATATGTA TTTATATTAA ATTCAAATTA ATCAAAATTT AAAAATTAGT TACTTAGTCA CACTAGCTAC ATTTTACATG 003520
003521 CTCAGTAGCC ACATAAAGCC AGTGGCTGCT GTATTGAACA GTGCTGATTA TGGAATATTT CCATCACTGC AAAAGGTTCT 003600
003601 GTTGGACAGC AGTAATCCAG ATCTCCTTTG TAGAAGAATT GGCACCTGGG GCTGCCTGAT CTTCAAGGGG CACATCACAG 003680
003681 AGCATGGTGT TGACCCATCT GGATACCATG TTTGAAGTTG ACATGGCCCA GAAATTTGAC TTCCACCAGT TAAAAATGTA 003760
003761 CTTCGACAGT TTTGTATTTA ACCTGTAAAT CCAGAAGCAT GTCAGGGCCT TCTGGATGGA GCACTGTGAA ATTAGCATAC 003840
003841 ACTTCAAACC CTCTTCCCTA AAAGATCATG CACTACTGTG CTGTACATGG TAGACCTATC TCATAGTGTA GGCTTCAGCA 003920
003921 AATACTCTTT GACAAATAAT TGGTTCTGTG CTGATGATAA GCCTAATAGG TGAAAGATGG TCTTTCCCTT AAAAAATTGA 004000
004001 GAGATCACAA ATTGGTGCAT TCTTAACTGT GGATAATTAT GTATGAAGCC AAATTGTAAT AAAACTGTTA TTTGCCAAAC 004080
004081 ATAGAAACCT TGCTTCGTGA CTAGGCTGAG CCCAGAGTGT TATTCTCTTC TTCTGCCTGT TATGTATCTG GGCAATTGTA 004160
004161 GGGCCTTTGC AGGTGAATCC AGTAGAGAAC ATGCTAAGAA TGAGCAGCAG TCATGCATGA CTGTATCATT GAAAGCCTTC 004240
004241 TAGCCATTTT CGTGGTTTTA TTTTTTCAGA GGGGCATCCA CCTGATTTCT GGAAGGCATT GCTTCACTTT CATAGACAGA 004320
004321 AGATGTAACG ACTGCCACGA AGATCCCTGG AGCTCTGCCT GGCGATTCTC ACTCCCACTG GGTAGCTGAC AAATTTTCCC 004400
004401 TGAGAAGACA TGGTTTCCTC CAGCAGCAGC AGAAGGAGTC ATGGGTTTTT CTGTTTCATG GCTCAAACTG TTGTGACTCG 004480
004481 GAATTATACT AGGACAGGGC CCTGACTTAT TCTTCTGGGC TGGGCTGAGT AAGGCCTGGC TGAGTGTAGC TGGGTACACA 004560
004561 GGTAGGGGTG GAATCAAAGC TGGAGGTACC CATAATGCTG GTTAGGAGGA TAACTAGCTA GAATAAGGTT GGCAAGAACT 004640
004641 GGGTGAGCAG GGATAGGAAT TAAGACTGAG GACTGGGCTG AGGGTAGGTC AGGGGTTCTG GCAGCAACAC AGCTGGAATG 004720
004721 AATGGAGAAG CACACAAACA AAACCAAGCT AAGAAGAGCC TAGATCAAGC TTGTCCAACC CATGGCCCAC AGGCTCCATG 004800
004801 TGGCCCAGGA
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Predicted Small Protein

Name NONHSAT122633_smProtein_434:679
Length 82
Molecular weight 8581.7711
Aromaticity 0.037037037037
Instability index 56.1543209877
Isoelectric point 5.47283935547
Runs 10
Runs residual 0.0187229171777
Runs probability 0.028351881293
Amino acid sequence MSTLSHAPAEFSDTNILDPADESIMTALPGRLPRAGDCSAPEVLGLQCGRTQPERKPHKS
ALSWSPMLVLVPPVALFAQAS
Secondary structure LLLLLLLLLLLLLLLLLLLLHHHHHHHLLLLLLLLLLLLLHHHLLLLLLLLLLLLLLLLL
LLLLLLLEEEELHHHEEEELL
PRMN -
PiMo -