NONHSAT122799
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT122799 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2027 nt |
Genomic location |
chr7-:112375221..112378748 |
Exon number |
2 |
Exons |
112375221..112376330,112377832..112378748 |
Genome context |
|
Sequence |
000001 ATGTGCCCAA AGGCTAGGCT GCTTTGTAGC TGGAGTAGTG CCCCTGTGGC CAGGGCGGGT AGGCAGGGGC AGCCTCAGAG 000080
000081 TTGATACCCA TGTGGAAGGG TCAGCATCTG CTGGTCCCTG GTGGGCTCCG CCTTCAATGT CAGGGCTACC ACTTGGACCT 000160 000161 GTTTAGTGAG CACTGGGGTC TTTTTGGATG TCCTGAGCTC AGCGCTCCAG AAAAATTTAA TATTGCCCAA TAAAAAGCCT 000240 000241 TGAGAAAGAC AGAATTGCTT GTGGAACATG CATGTTCCAC CCCACCTGGA CCCCAGATTG TGCGCATCTT CGATGAGCTC 000320 000321 TCAGATTCCT TGTTCAGAGT GGCTGACTTG GATGAACACA AATGTGGAAT TATGTCAAAG TTTGCAAAAA TTACTAGCTG 000400 000401 ATTAAAAACA AAACAAAAAC TAGGCAAGTG GCCTAACTGT TTATGTTTGA TTTTGAAATT AGTGGAATCC ATCTAGACAA 000480 000481 AGAAAAGTGT AAAAGAGCAG TGGACCTCAA TGTTAAAATC TTGGATTTGA GTAGTACATG TCTTACGGCA AACAACTTTC 000560 000561 CCAACAAGAT TGAGAAGCAT CTCTTACTAG AACACATTCA CCATAACTTT TATCTGATGG GGATCGTATC ATAATTGATG 000640 000641 GTCTCCATGC AGAAGCACCA GGCGACTTGG TGTGAGAAGC TGCTTACAAA ATTTTTCTTC ATCCCTATAC TGGTCAGTTA 000720 000721 AAATGTTTAG AAGAATTGCT CAGCAACAGA GATCCTCTGC AAAAGTTGGT AGGGTATTCT GTGTTTTCCA GCAGGGCTCT 000800 000801 CCAAGGAACA ATAGTTAAAA ATTCAGAGAC TGTCATCCAG TTCCCTGAGA AACTCTCTGA CAAACTTTCT GAAAGAACTT 000880 000881 GAAAAGATTT TGAGATGATA CGACAGATGA AAAGTGAAAA ATGAAACAGA ATTCTCAAAG TTCCAAAGTA ATGCCTTGGG 000960 000961 ACCCCCACTA CCAGAGTGGT GTGATTCATG CACAAAGGTA TAATATTGAC CCTGGCTTAT ATTGCCTGTT TTTCTCCCTT 001040 001041 GGAGCATGCA TGGAAGGCCT GAATATTTGG CTTAACAAAC TGTTGGAGAT TTCCTTATAT GCAGAGTAGC CTGCAAAAGG 001120 001121 AGAGGTATGG TGTGAAGATG TCCGAAAACT GGCCATCATT CATGAATCTG AAGGACTGTT GGGGTGCATT TACTTTGATT 001200 001201 TTTTTCAGCA AGCAGACAAA CCACATCAGG ATTGCCATTT TCGAATCCAC AGAGGCAGAT TAAAGGAAGA CAGAGACTAT 001280 001281 CAACTCCCAG TCATAGTTCT TATGCTGAAT CTTCCCCATT CCTCAAGGAG TTCACAAACT TTGCTAACTC CTGGAATGAT 001360 001361 GGAAAATCTT GACCATGAAA TGGGACATGC TATGCATTCA ATGCTAGGAC GTACTTCTTA CCAACACATC ACCGGAACCA 001440 001441 GGTGCCCCAT TGATTTTGCA GGGGTTCCTT CTATTCTAAT AGAGTACTTT GCAAATGATT ATTGAGTAAC CAGTTTGCCA 001520 001521 GACAAAATTA GAATGGGCAG CCACTGCCAA AAAAATATGG TGTCTCAGCT TTCTGAATCT AAAAAAGTTT GTGCTGCAGC 001600 001601 TGATATGAAA CTTCAGGTCT TTTATGCCCC TCTGGATCAA ATCTACCATA GGAAGCATCC CCTGAGGAAT TCAACCACAG 001680 001681 ACATTCTCAA GGAAACACAA GAGACATTCT GTGGCTTACC ATATGTTCCA AATACTGCCT AGAAGCTGCG GATCACCTAC 001760 001761 CTCATGGGCT ATAGGGCCAA ATATTACTCT TACCTCATGT CTAGGGCAGT CACTTCCATG GTTTGGAAGG AATGTTTTCT 001840 001841 ACAAAATCCT TTTAACAGGG CCACCATGGA GTGCTATTGC AGGGAGATGC TGGCCCACAG TGGAGGCAAG AAGCCCATGC 001920 001921 TCATGGTTGA AGGTGTGCTT CAAAAGTGCC CTTCTATTGA TTACTTTGTA AGTGCCCTTG TTTCTGACTT GGATCTGGAC 002000 002001 TTTGAAACTT TTGTCATGGA TTATGAA |
Predicted Small Protein
Name | NONHSAT122799_smProtein_1532:1741 |
Length | 70 |
Molecular weight | 7813.924 |
Aromaticity | 0.0724637681159 |
Instability index | 43.3755072464 |
Isoelectric point | 8.52142333984 |
Runs | 12 |
Runs residual | 0.0345817190415 |
Runs probability | 0.0321350762528 |
Amino acid sequence | MGSHCQKNMVSQLSESKKVCAAADMKLQVFYAPLDQIYHRKHPLRNSTTDILKETQETFC GLPYVPNTA |
Secondary structure | LLLHHHHHHHHHHLLLHHHHHHHHLLLLEEELLHHHEELLLLLLLLLLHHHHHHHHHHHL LLLLLLLLL |
PRMN | - |
PiMo | - |