NONHSAT122818

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT122818

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

7310 nt

Genomic location

chr7+:113109789..113124124

Exon number

2

Exons

113109789..113110137,113117164..113124124

Genome context

Sequence
000001 tacgggctga actgcatccc ccaaaattag tatgttgaag tcttaatccc aagcacatca caaaatgact atgtttggag 000080
000081 agagggcctt gaaagtgata actaaggtga aatgaagtcc tataagtagg ccctaatcca atctaactga tgttcttata 000160
000161 agaagagaag attagaacat agacaaccct gactgaggac atagaaaggc ggcggccact tgcaaaccaa ggaaggaggc 000240
000241 ctctgaaaag ttcaaacctt tcaggacctt gatcatggac ttctagcctc cagaactgtg aaaaaattaa tccatgttct 000320
000321 ttTTttatgc tttaagttct gggatacatT CCTTAATATA AAGACATACT TCCTTGGTAT TTTCTGTCTT TCTTATTCAC 000400
000401 TGGAAcagag tttcccatca agtgtgtgtt ctgtgagcat aagttctgtg agaggctctg tggggacaaa gtttaacttc 000480
000481 ataatcaaat aatttggaaa gcatagggta agtatagcct ctggaaaatc atattttacg ttgacaaatg ataaaaagct 000560
000561 ttatttttat cttttcacag taaaaagtta acttagttta acacattttt tttttccaaa gtctcttggc tatagatatt 000640
000641 atcatttttg gaatgtgtac tgacatcttc cagaacttgt attccttgga attcacttgg gTCAAGGCAA ACATAATACC 000720
000721 TTGATTTGGA AACCACTTGC AGCTATACTG TACAGCAGCT GAGAGAAGTA TTTTCTTTTA CATGCACTAA GGCTAGAATG 000800
000801 AAAATAGTTA TTTTGAGGTG CCCTGTGGTT GAATGGTCTT TTCCACAGAG TGTTGGATCT TTTTCTTTCA TCTCCTTGAG 000880
000881 CACCAATCCT TCTAGCTTTG CCAAACTCAG ACTCATTATG AGTACCCATG ATGCAATTAA AATGCAGTTT TAAATTAAAA 000960
000961 TGGTACTTTA ACGGATAATG GTACAGGTAC CTTATCCAAT AGTGTTGCTC ATGGAGTTGA GAATAATTTT TTCATCTGTC 001040
001041 TCACTAGCAG TTAAACCAGA CCATTTATCC ACAACTATGA CAGCATAATT TCCAGGTCCT ATTTTACTCA TGAATTGCTG 001120
001121 GAAGATGTGT TCCAAAAGAG AGTGTATCCT AGCAATTAAA TAAATGATAG ATTGTTTCTG TGAATTTACT GAAATTAGGG 001200
001201 ATAATAAATT CAGCAAAGCT TTTATCAACA AAATGTAACT GATTAGAACA ATCAATTACC TAGATTTTTT TCCTTCTGAA 001280
001281 ATTATACTTA GGGGAATCAG AGACCGAATA TAACAAAATA AATTGATATC AGGAAAATCA ACTTCAGAAA ATTAATGTTC 001360
001361 AGTTCAGGTA CACCCAAATT TTTAATATTT TTTACCTGTA GAACGGTGGC ATAAAACTAG AATAGAATCA TTTTTATTAA 001440
001441 TGATAATGTA ATataaaaac agcatttctt aaatacttgc tataagtcaa gtactattct gagtactcta catatattta 001520
001521 attctcacaa tgaatatatg aggtatatgc tattacattt attgaacaca atgagaaact aaaggttaga gatataaggt 001600
001601 aacttgccca aggtcacata ctttataagt agtaaagact agaattttaa tccaggcatc ctgacATGAA GATGCATGAC 001680
001681 CCATTTAGAA CTAGTATTAG TTCATATTGT TAAGTCAATA GGAACAACTG GATTAATTAT ACAATACTTT CATACGACTG 001760
001761 GTAGGTTCTT GAAATCAAGC ATGCATAATT TCTAATTTTT ATGCACAGAC CAGATCCCAG GAATTGACAT TTTTAACAAG 001840
001841 CACAACCCCT CTTCCTCACT CTCAGTATTT TATTGCAGGT AGTTCACAGT CAGTACTTTG AGAAACACTT GTAAAGTAAT 001920
001921 GTAAGTTCTG AGAGATTGAA GAACACAGAA GGCAAATATT TTAAGAATTT GAAAGCTCTA ATTAAAATGT TTACACTTTG 002000
002001 CAGTCTCACT TTATCTGCTC TTTTAAATAT TACTTCCCTC CTTCTATAAT ATCATAGATA TATATTAAGT GCTTAATTTG 002080
002081 TGTCTCATAC TCTTATAGCT AGAGACATCT TTATAAGTGC ATAAAGTTta aaataataat ttatattagg ctacattaag 002160
002161 tcaagtatgc atagttaagt tcctagggta atcactgaag gaatagtttc aaaatgctaa tggagagaaa atatgaatag 002240
002241 taaaaTAGTT ATTTGACCTa aagatagcaa gaaaagatag taacgagaat ataaaataga tggatgaaat agaaaataac 002320
002321 tatatctata ataacattaa atgtaaattg agtaaataat ccaattaaga cctagaatat cagaatcgaa ctatatgacg 002400
002401 atgagtgcat cttaaataga aagacacaga aaagttgaaa gtaaaatgta aaaggtatat catgcaagta gtacttacca 002480
002481 aaaatatttg gcttagctat attgacatta gaaaaagtag attcttatga caatttgtat tagtagctaa agggatttac 002560
002561 atttcaaaat gataaaaagg tcagtctcct aggaacataa atcccaaatc tttatccacc aatagtgtaa ttattaaata 002640
002641 catacagtaa aaaattatta aatacataca gtaaaaaatt gatatagcta aacattttaa tagaaaaatc taaaactaaa 002720
002721 aatttagtag aaaaattata taactaaaca ttttaataga aaaatctaca atcataataa aagaccttaa cacatctctt 002800
002801 gtgaagttac ttttaaaaag taaacaaaaa ttctcaaagg atagagaaaa tcttagaaac acaattaacc aacttgactg 002880
002881 aataaatata tgtagactgt ttcacccaac aatgatagaa tccacattat tttaattgca gatgaaacat tttaaaaatt 002960
002961 aataagatcc tgggtcatat agtaaatatt gacgtatttc aaagccttga ataattttta gtttttctaa ctggaataaa 003040
003041 tttatgttaa aaattagtaa ctgaaagatg attaggacat ttccaaccct tggaaactag acacttttaa atccaggaat 003120
003121 caaaaaataa attataatgg agattacaga ccaagcacca tggctcatgc ctgtgctttg ggaagtcgag gtgacaggat 003200
003201 cacttgaggc caggagtttg agactagcct gagcaacata gcaaaatcct atctgtacac acagaaaaag ttaggtgagt 003280
003281 gtggtggtgc atgtctatag ttctagctac tcacgagtct taggtaggag gattgcatga gcccaagagt tagaggctgc 003360
003361 aatgagctga ttatgccact gcacacctgc ctgggaacag agtgagaccc ggtctctctt aaaaaaaaaa aagaaaaaga 003440
003441 aaaagaaaat acttttaatt aaatgatagt tgagatatta tatgtgaaaa ttaatggtat tcagctaaag cagtgtttag 003520
003521 atacaaattt aaagtctagg atctatttat tagaaaaaat aagagctaaa agaggacaat ctaagcttcc ttttcaagac 003600
003601 acacaaaata cagcaaaaca aactgaagac tagcagaagg aaataataaa gatgagataa taaatcaata atataaaaca 003680
003681 caaacaaata atggaggaaa taaaGGTTTT TTATGGGCAA CGATTTtggc cgattaatga tgctcacaca ttctttgaca 003760
003761 ctcctcttat ggagaggtgc actttgtgtc tgctgtcctt aaatctggtg agctctgtga ctattttgaa taattaaata 003840
003841 tggcagacat gtgccattct ctctggatct aggctttaag aaactgtcag tttccacttc ctgtctctag gaacctgcac 003920
003921 ttacagccct gagatatcat gtcagacatc tgatttacac gtaagtgttt cagacgacta tttcaactaa ttcctgcctg 004000
004001 ccagttatcc ctgccaagat gtctggcata tgagtgaagc tgatatggat ccttccagct ggagcaaacc agctggccgc 004080
004081 tgaatagcac caactgatct cagtcagtac ctcaaaagag tagaagaatc atccagctga gccctgcccc aattcctacc 004160
004161 caccaaatca taagatataa aaaagtttgt tattctaaat tgaaaggttt tagattattt gttatgcagc aatagatagc 004240
004241 gagaacaAAT ACATATAATT AAATTTGACA ATTTTCAATT TTATGTTGTT TTAAATGttc tattatgaag taattttaga 004320
004321 tttccaaaaa aagttataag aattttacaa aatatttcca tattcatata gatttttcaa atgatatttt tccacctttg 004400
004401 atttctctat ctacccatca actgtccatt tttgagtatt tgagagtaag tagctgacat tattcattac cactaattac 004480
004481 ctcacatacc tcagggtata tttctttaaa acaaagatat tccctcatat aactgcaggg cactttttga aatcaagaga 004560
004561 gcatcattga tttagtactg ttatctatat atagtactat acataggcct tgttcagatg acaccatttg ccctaatcaa 004640
004641 gtactttata gtaaaaggtg atccttttgc aatcagttgt gtctcctgag tctcttttaa tctgggacag ttccagtctt 004720
004721 cgtcttttat aacatgataa ctctcaagaa tacagtcaac ttatgttttt aattaatgat tcttgatgtt tatctactgt 004800
004801 ttcctcatga ataattcagg ttatgtctca aaaaagaaac aatactacag aagtaacgta ctattcccag tgtgtcatat 004880
004881 cagaaggcac ttaatgttgt cttatgctat tattgataat gttaacttta atcacttggt aaaggtggtg tctgcaaagt 004960
004961 ttatccactt tcaggttgct atttttcact ttgtaactaa tagatatctt gtgataggat actttgaggc cagctaggta 005040
005041 aatgtcttat ttctcattaa acgtcccctc actagttttg gcaAATGTTt ttatgtcact tcaaaattcc tatgtagaaa 005120
005121 tcctaactcc caatatgatg gtattagaag atagggcatt tgttaggtga ttaggtcatg agagtggaga cctcatgaat 005200
005201 ggaattagtg cccttatagc agagactctg gagcactccc ttgccccttg aggacacata agacatttga ggacacaatg 005280
005281 agatatccat ctatgaaccc aggagcaggc cctcagaaaa tgctgaattt gcctgcagct tgatcttggc cttctcagcc 005360
005361 tcaaaaactg caagaaataa atttctgttg ttcttagagt ccacctagtt tatggtattt tgttatagca gcctgaacaa 005440
005441 actgagacaa ttggtgattt ttgtctcact cctttatcat tttgatggtt gccaaattat gattttccaa ttgtatcatt 005520
005521 ctttatacat ctaatactac attgtactat aagaaagaac atttcttcat aattggttga ttacttaatt aatatttgca 005600
005601 tggactcagg tactcctatt taatgggttg tgatttctta tggtcattat attgatgctc aaattgttcc agatttaact 005680
005681 agtgggagct ctttcaaaat acctcttagg attttgtaac gtgtcctcat tattatttaa gtatgtcttt actttcttgc 005760
005761 attacagcat tacaagatgt ttcaTTCACA GGCTTTGAAG TTCGTAGCAC AGAACTTCTT GCCCTTTGAT GTTACCCATT 005840
005841 TATGATACCC TATGTCCGAC ATTTTGTCTC TACACAGACA CCAGAATGCT TACTTGACTT TATCGCCACC AGATTCTTGA 005920
005921 GCCTCTTCTA TGATTCCAGG ACCCCTGATT GGATGTGCTC TATTTCCTCT ATTTTTAAAC CTGTCAGATA TTATCTTTGC 006000
006001 TTTTCTTAAC TTACCACTCT ATAACATGGG GTATGATCCT GTACCCTGTG TGCCTTTGAT AAGTATTGGT GGACTGATGG 006080
006081 TCATGCACAG AAGAGCTTGC CGCACTATAA CCCTCAGGAA GAACAGCAAG CTAAAACATA TGACCTAACT TCTACAGTTT 006160
006161 TTTAGCATCA CAAGAACATG CAGGGCACAT TATTTTGAAT GAGGACACTC AGACCATTAA ATGTCAAAGT AGCCTAATTG 006240
006241 TTAACGGGAC ACATGTAGTG AGAAAAATGT GTTTGTACTT GTTGAACAGA AGACAAATGT AGCCGAAAGT ATTTAATATT 006320
006321 GAAATACAGC TTAATCAGGT GCTTTAAACA ATTAAGCCAT ATAATTTATT AAAGCATGGC TCTGAGTTTA AGTATCAACA 006400
006401 CTCTTCCTCT CCCATTCTGT TCATCCTTTG GAAGCCTACC TTCCTATCCC CATTTTGTTT AGTCACCTTT GGCTTGAAGT 006480
006481 TGACCAGTAT TCAGTGGCTA GTGGCTTCTA TCTTATGGCA AGAGAAGGAA AAGAGATGAG AAGTAAAAGA CAAAAATAAT 006560
006561 AGAGAAAATA TTTAAAGGAT TTGAAGCAAA GCATCTGAGG ATATAGGTAC TGTTTAGCAA ATCTGAATAT ATTGCAACAT 006640
006641 TATTGCAAGG AAGGAGAGAT ATGTTAGGGA ATTTCAGCAC TAAAGATGGT CTACTTTTAG CAGACACATA AAGATAATTT 006720
006721 CATTTGAATT TTTAAATTTC CTTTGGCATA CAATATGTTC TTTGCTAAGA GAAAATACCT TTCATATGTC ATTCTAGGCA 006800
006801 TTCTTCAACA CAAAGCAGGA CAAGATGTAT TTTAAGGTaa agagtacaga cactggaatc agtaggagtt gctgtttcca 006880
006881 ttcattagtt ttgagacctt gagcaagact atgaatgtca gtttcctcat gttaaaacag ggatgataat acttattttg 006960
006961 ttatgtgcta taaagcagag gtctccaacc cccggggcca tggactggta caggtctgtg gcctgttggg aactgggcca 007040
007041 cacagcagga ggtgagtgaa gcttcatctg tatttacagc cactcctcat cactcgcatt accacctgag ctctatcgcc 007120
007121 tgtcacatca gcagcattag gttctcacag gagcacaaac cctatggtga actgctcatg tgaaggatct agcttatgtt 007200
007201 ctccttgtga gaatctaatg cctgatgatc tgtccccatc tcccatcgcc cccagatggg agcatctagt tgcaagaaaa 007280
007281 gaagctcagg gctcccactg aatctacatt
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Predicted Small Protein

Name NONHSAT122818_smProtein_797:952
Length 52
Molecular weight 5776.8137
Aromaticity 0.117647058824
Instability index 49.6764705882
Isoelectric point 9.78216552734
Runs 9
Runs residual 0.0222286934576
Runs probability 0.0358495750652
Amino acid sequence MKIVILRCPVVEWSFPQSVGSFSFISLSTNPSSFAKLRLIMSTHDAIKMQF
Secondary structure LEEEEEELLLEELLLLLLLLEEEEEEELLLLHHHHHHHHHHHHHHHHHLLL
PRMN -
PiMo -