NONHSAT123071
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT123071 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1737 nt |
Genomic location |
chr7+:123634676..123667713 |
Exon number |
5 |
Exons |
123634676..123634771,123634982..123635156,123639077..123639203,123653165..123653261,123666455..123667713 |
Genome context |
|
Sequence |
000001 AATGCTGTAG CATAATAAAG GGAGCAGATG AATGACTGAA GCCCTACAGC TCCACTAAAG ATTAGAGTAA AATCTGCACT 000080
000081 TCAAAAGATC CTGTATTCTT GCAAGAGAAC AGAGCTCCTG ATCACCTGTG TGCGTCCTTT GAGTGGATGG CAGCTGCATC 000160 000161 TCTGCATTAC AGCTAGTTAG AATGATGAGT CCTTGCTATG CCTCAAGCAC TGTTTCGAGT GTTTGATGTC TATTATCTCA 000240 000241 CTTCATCCTC ACCAGGACCC CATCCGAGGA TTTGCGACTT GAGTAGCATT GACGGTGGTG ATGGGGAGCC TGGCAAGACA 000320 000321 GCAGATGTCT ACAGCAAGAG GAGGGAATGG GAAGCTGCTC TGATGGCGTA ATCATCAAGG TTGCTGATAA AATGGCCTTA 000400 000401 ATTTCAGTTG ACAGTAACTA TTGGATCCCC AGGAATATGT TTGCATATTT GGGGAGAAAA TACTATTGGA GGGGAACAGA 000480 000481 AATGCTACTA AGGGTCTCAC TGTGTCACCC AGGCTGGAGT CCATCAAAGC TCACTGCAGC CTTAACCTTC TGTGCTCAAG 000560 000561 GGATCCTCCC ACTTAAGCCT CCTGAGTAGC TGGAACTACA GGCATATGCC ACCGAGCCTG GCTAATCTTT GATTTTTTTG 000640 000641 TACAGATTGT GTCTCCTTAT GTTGCTCAGG CTGGACTCAA ACTTCTGGTC TCAAGCGATC TTTCCATCTT AGCTTCCCAA 000720 000721 ATTGTTGGAA TTATGGACAT GAGCCAGTGT GCTTGGCCTG ATTTTTTTTT TTTTTTAATG AGAAAAACGT TCCTTAAGAA 000800 000801 AAGTTTCATT GTAGTAAGTA ATCAGGATGA ATAGCATATA TTAGCTCCGA AAAACTTTGG AAGCCTTCTT ACTTCACTGA 000880 000881 AAGTGGGGTT TATCAACTCA GCTGCCAACG GCTTTCCTCC CATTTAGCCT TTGTGTGAAA AACACAATTA ATACTTTCTT 000960 000961 GAGTAGTACA AGCTGAGCCG AGAAACCATC TTTCAGAGGT GTAAATTCTT GCCTTGGGTG GAAGGCTGGA TGTTATTAAC 001040 001041 TTTCACAATT TCTTTCAACA CTTGATTTTC CTCAATCATG GTAAAGACAT ATTATTTATT TTTCTTTTTA GTTGGGAAAG 001120 001121 TTGATTCACG TGACTTTTGC ATTTTGTAGA ATTTTTAAGA GGTAAGATGA AAATTAAACA TTTGTGCGTG TTAAGGATCC 001200 001201 ATGTTTCTCT GTCAGATGTC TGGTAATTTG CTTGACGATT TTTGCAAAGA TAATTTAGAA ATTAAGGAAA CCATTCTCTA 001280 001281 CGTTTTTCTT TACATTAAAA GAAAAAAGTC TCCAATAAAA AATTTCTCTA TCCACATTAC AGGTTAATTT ACAATTTCAG 001360 001361 CTGCTGGTGG CTGGCTTGAG GCCTCAATGT TAAAAATGAG AATGAGGCTA ATTCTAGTGA ATAGAGGTCC ACACAGACAA 001440 001441 TTGCTATCTT TGTTAGATGC TCCAGTACCA AGCCTAAGAA TAGGAAAAAA ACTAAAAACA CCCTGGAAAT GTAACAGAAT 001520 001521 CATCTTTTGC TGCCATCTTT CTCTTCAGTA TAAGCTGAGC ATGTGTTTGA TGCATAGCGG TGTGGGAACT ATATACTTTC 001600 001601 TTCTTACTTT CCTTCAGTAA AGGAGCTTAG CTCCATTAAG CATTGTTCAA GATAGTGTAT TTAAAATTAA CATAAAAGGT 001680 001681 AAAAGATTTT AATGCCTTTT AATATAAGGA AAATTGATTT TATTAAAATG CTTTAAG |
Predicted Small Protein
Name | NONHSAT123071_smProtein_197:370 |
Length | 58 |
Molecular weight | 6289.9944 |
Aromaticity | 0.105263157895 |
Instability index | 58.5315789474 |
Isoelectric point | 5.03790283203 |
Runs | 7 |
Runs residual | 0.0311403508772 |
Runs probability | 0.0467105761223 |
Amino acid sequence | MPQALFRVFDVYYLTSSSPGPHPRICDLSSIDGGDGEPGKTADVYSKRREWEAALMA |
Secondary structure | LLLEEEEEEEEEEEELLLLLLLLLEEELLLLLLLLLLLLLLLHHHHHHHHHHHHHLL |
PRMN | - |
PiMo | - |