NONHSAT123138
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT123138 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
5155 nt |
Genomic location |
chr7-:126999844..127004813 |
Exon number |
1 |
Exons |
126999844..127004813 |
Genome context |
|
Sequence |
000001 GAGGAAGAGC TGTTTTTCTG TTCCAAGTCC AGCACTTCCA CCCTTGCCTG TCTACTTCAC TGGACTTTCT TCCAACAACT 000080
000081 CCTCCTCTTT ACCCCTCCCC AGCTTCTGTC TCCCTGTCCA CTAGCTCCTC TTCCTCAACC TACAAACATG CTCAAATTCC 000160 000161 TTTCAGTCAA AAAATAAACT TCTCTTCTAT ACTACCTTGA ACCTAGTTAC TGCCATCTAG TCTGTCAAAC TTCCATGTGC 000240 000241 TCTCATACTA CCCTGTTTTA GTACTGATTC TGTCACATTG TAATTGTTTA TTTCCTTGTT TTCCTTCTAT ATCAGACTGT 000320 000321 AAGCTTCTGA GAAATCTGTC TCTTGATCCT GGTTGATTCA CCGAAGCCCA AGCTAGTTCC TAGTGCATCG TACGCATTCA 000400 000401 GTAAATATTT TTTGAATGAA TGAACAATGT TAGAGCCATG CCTCTGCCAT TCACTTTGTG AACTACCTGT AATTTTTTTC 000480 000481 TACCCCTACA TTTCGGTTGA AAGTTCACTT GAAGGTCACC ACATAAATGT GAAATCTAGT GGCTTCTCTC TTTACATCAT 000560 000561 GCTTGACCTC TGCAACCATT AGTGCTTACA AATTTACCTT TTCCACACAT TCATGGTCAC GTATACCTGG GTCATTTTGG 000640 000641 GCCAGTCTCA GTATTGCATT CAAAAGAAGC AGACAAGCCC CGAACCTTTG GAAAGTAATG AACTTCTGTA ATATATTAGT 000720 000721 GAAATCTTCT AATGAGATAG AAATATACAA TTACATAAAG CTCAGCAAAC TTCAAATAAG TTCTTTTTAC CCACCTTCCC 000800 000801 ATATCCTTAC ACAGCTTGGC ACCTTCAATC TCTCTTTTGT AACAGTTCAC CCAAAACTTG TACACTTTTG GCCAAAAACC 000880 000881 CCTTGTCCTT TGTCCCCTTT TTTCATCTTC TATGTTTATT TTCTTCCAAG AATAGATTAT TCTTTCCAGT TTAAATCACT 000960 000961 TTAGCCTCTT TTGGCTCCTT CCAACCAAGT TCTTTCCTAA ACCAGTTATC TTACTCAGTA TTTTAGAAGT CCAGGAGCAT 001040 001041 TGTCTTGATT TCATTTGGTT TGCCCTTACC AACTTTCTTT GCATCATTTT ATTTAATCTT AATGCCTCAC ATCAGTGAGT 001120 001121 ATTCCCTGAC CTCCTGGGTG TCTCCCTTCT GTGTCTCTGT GGTGCCCCGT TTATAACTCT CTGGAAATAA TCTATTTCTA 001200 001201 TCTCTTCTCT AGGCTATACA TTTCTTAAGG GTAGGAGTCC TGTCTTTTTT TTGTACCCCC ATATCTAGCA TAGTACCTGG 001280 001281 AACATGGTGG GTGTTGATAA ATGTTTATTG GACTGATGCT TCTGTGAAAT TTAATACTTT CTCTTTTGCC ACTGGCTTTT 001360 001361 GTTTTGTTAC TAGGTCTTCA AATATGGATT AAGGTTTCCT TAATGTCTTT TTTTCTTTTT ATATACTCTT AGTGATTCCT 001440 001441 CTATTCCCGA GGTATCACTT ATCACTTCCA TAAAGATGAC TCCAGGTCCG TTTTCTAGTC TGGCTGTTCT CCTTATTATA 001520 001521 AGACCATTTG TTTCCAAAGT TGAATGTCAG ACATCTCCAC ATGAATGTGT CACCAGTATC TTAAATGCAA CAAAAAACTC 001600 001601 AGTAATCCAA ACTTATCTTC CTTTTAAAAT TTCTTCCTAT GTGCTCCATG TCTCAGTTGT TCTAACCCCT ACCCTTCCGG 001680 001681 TTACCTATGC TAGTTGGAAT CCTGGCAAAT GCCCTAACTT CTTTCTTTTA TACTCTCCCT AATCTGTGAT CAATGCCTAT 001760 001761 CCATCCTGCC TCTGAATGTT TTTCACGTTT GCTTCCCCTT CCCATCTCCA CTTTTAGTAG TTTTGTTATC ACTTACCTTC 001840 001841 ACTATTGCAG TAGTCTCTTA ACTGACCTCT TTTCTAATCT GTCTTCCGTG CTGTTGTTAG AAATATCTTC CTAAAACACA 001920 001921 GATCTGTTGT TACTGTATGT TCATCGCTTG ACTAATTTAC TTATCTTTCA GGTCTCTGCC AAATGTCACT TCTAAATAAA 002000 002001 GTATGTCTGT CTTCTTTGTT GTTTGTTTCA TGTTCCTTTC CTACTGTCAT CTAATACTGT TTGTAATTGT GTTTATATTT 002080 002081 GTGCATTGAT TTGTTTAATG TCTTTCTTCC CACTGGAGAG ATTTATGTAA GGGACTGGGG AGAGTTATGT AGACCCTGGG 002160 002161 CCTAGCACAA TGCTCGGGAC ATAGTAACAC TTAAAACATA TCTGTTGAAT GAGTGGATGG ATAATAGCAA AGTACAGGCA 002240 002241 GTGCAGGCAA ACAGATGCCA AGTAGCAAAG GCAGGGAAAT TACAGGGTCC TAGACTCTTA GTACATTCTC ACAGACCTTA 002320 002321 ATCTGTAGTT TAAAATAGTA ATGGGCTTCT CTCTTTTGCT TTTTGCATTT ATTTCCCTAA GGATGAGAGT GAACAACTTA 002400 002401 CTACCCCACA CTGACACTTC AGTGAGGGCA CTGTGGAACC TTTCTAATCA GAAGATGGGA CCAGGCTTGA CAATGATTCA 002480 002481 ATCAAAGCAG TTTTAGTGTC ACACTTGTCT CATGGAGGCT ATTTGTATTT CTGAAGAAAT TCCAATCAAA TAACAGCTTA 002560 002561 CTAGATTTTT TTCCTGGTCT AAATATTATT TTTGGGCATT TTCCACAAAA AGCTTTTTGG GAAAGGTGGT TCTTACACTG 002640 002641 GGGCTTGGAA TAATTGTATC TCTATGCTTG GCCTTGGAAT AATTCTGTCT CTGTTGGAAT TGTGCACACG TTGAGGCCTG 002720 002721 AGGCCTTATC TTTTATAGGG CCTTCACTAT GTAGCTTCTC ATATATTCAG CATCTTAGGA GAGAATCATA TTCAACATAG 002800 002801 TTTTGCTTTA AGCTTTTTAC TTGGTATCAG CAGTTTTGCC TTAAGTTCTA AAGCTTAATA ATGAAACTCT GTTGAATGAG 002880 002881 AACCTTTCCA AAAGATATAC TTTTCTACAT AAGCTGAGTT TATTCATCCA GAGTCATCAA GAATAGATTA TATTTAGAAC 002960 002961 ATATGGAATG AATAAATATT AGTGAATTCA TCTTTATTGG ACTTTTAAAT TTCTTTACAT ATAATTCCAT TCACTCATTT 003040 003041 ATTCAGCCAT CTACACTTGA GCAACTACTT TATGCCAAGG ACTGTAGTAA ACATTTAGGA TCTGAAGAAA AATATGACTT 003120 003121 GATTACTCTT AAGAATTTTA TAAGTCTAGG CTTTTTTTCA TGTCTGAGGC CAGATTGATT TTTCTTTTCC TTTTTTTCAC 003200 003201 TCAGGATGAA GTACATAGTG GTATAATCCT AGTTGACTGC AGCCTCGAAC TCCTGGGCTC AGGTGATTCT CCTTCCTCAG 003280 003281 CTTCCTGAGT AGCTGGGATA CAAGCCTGTA CCACCACACC TTGCTAATTT TTATTATTTA TTTTCTGTAG AGATGAGGTC 003360 003361 TCTCTATGTT GCTCAGGCTG GTGTCGAATC CTGGCCTCAA GCAATCCTCC TGACTTGGCT TCACAAAGCG ATGGGATTAC 003440 003441 AGGCATGCAC CACCACACCT GGCCTTAGAG TGATTTTTCT TAAGTGCAAA TTCGTGCTCT TTTTTCTAAG GCCTCAGCTT 003520 003521 GGAATGTCCT CTTGTATTAC CCACCTCTCT TCTTTCAGGA CTCATCTCTT AGGAACCTTC CCTGTCCAAG GCAGCTGAGT 003600 003601 ACCCTTCAGT ATACTCATCC TACCCTCCCC CTCTCCTGTT GTGGCAGTTA GTACCATGTT TTGTAACTAC CTGTTTATTT 003680 003681 GGGTCTCCCC AACTAGACTG AAAAAGGCGC TTGAAGGCAG GGCTGTTTCC GTCCTTGTGT CCTGAGTGCT GAGCACAATA 003760 003761 CTGAGTACAG TTTGTGACCT ATAGAATTTG TGGAGGGAAG GCATTTTGGA TGGAGGCTGT TGGTTAAGTG ACCTGCAAAA 003840 003841 CTGCTCCAGT ATCATGCCAG GATCAGTCTT CTTTGCTCAT TATTGATGAG AAGCAACACT AACTTATGTC TTTATTCCTA 003920 003921 ACTTAATTAT ACTCCAAGTA CACATTTGCA TGCTTCATTA CATGCCTGTA GTGATATCAG TGACACTGAT AAAGTATTTT 004000 004001 TTCATATTTT AGTTCTCATG TTTTTGACTC TTTATTTTAA CTTTGTTGTT GATTGAATTG AGTATTTGAG TTGCTGTTAG 004080 004081 TATAAATAAA GTTTCCATCT TGGATGACTT ACCATGTTAA CAAAAAAAAA ATCACAAGCA GTATTATGTG CTAGTGATAC 004160 004161 CTTGTGATTT AAAATGTATT TTGTTCCAGC AAAGAACCAG TTTGGGTCTC TTTGGAGAAT GGGCATACAT CTGAGTTGAC 004240 004241 CTCAACTTTT CTGTAGGAGA GATTATTGAA TCTCCTATAA AGGATTATAT GTAAATATAT AAATTAACAT TTGTCTGTTT 004320 004321 TACAAAATAG AGTGTCTGAA ACAAGAATAC ATAAAATGTT ATTTTCAATG TACTAGAGTA GAGGAGTTTG GTATTTAAAG 004400 004401 GAGTTCTGTA CTTTGGTAAA GCCAAAATTC CTTTGATTAC ACTAGTGGTT GGTTATTTAA TCAGGATGTG AATTCAAATT 004480 004481 GCCTACAAAA TTTTGAAAAA ATGCAGATGT TTGGCTGACT CCACATCTAT CAGATTGCAA TTTCTAGTGG TAGTGTCCAA 004560 004561 GCTCCTATAT ATTTTGTACC AACTACCTGG GTAATTTGAT GGGTTTTCAG AACTACTCAA CTATATAAAC CAAAGAACCT 004640 004641 CAAACCTTAA CATATATATG ATCATGTGGG ACCTTGTTAA AATGCAGATT CTGAGTCAGG AGCTCTGGGT GTGACCTGAG 004720 004721 ATTTTCCAGT TCCAGCGAGC TCCATGTGAT GTCCGTGCTG ATGGTGTGTG ATCCACACTT TGAACAATAA GGCTATAAAT 004800 004801 AATAACCATC TACATTTTAA AAGATTTCCT TTTTTTTTTT TCATTTAAGT GTGGTGTATC TGTTTCCTAC TCTTGCTTAT 004880 004881 TCTATAAGAG AAGTGTAATG GGCTTTAGAT CCAGTCTAAA ATAGTTTTGG TTTGGATATT GTCTTCCATT AAAGTTTCAG 004960 004961 TACGCAGAGG AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 005040 005041 AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 005120 005121 AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAA |
Predicted Small Protein
Name | NONHSAT123138_smProtein_1475:1741 |
Length | 89 |
Molecular weight | 9701.3058 |
Aromaticity | 0.113636363636 |
Instability index | 47.4193181818 |
Isoelectric point | 8.93206787109 |
Runs | 16 |
Runs residual | 0.0504545454545 |
Runs probability | 0.0811473237946 |
Amino acid sequence | MTPGPFSSLAVLLIIRPFVSKVECQTSPHECVTSILNATKNSVIQTYLPFKISSYVLHVS VVLTPTLPVTYASWNPGKCPNFFLLYSP |
Secondary structure | LLLLLLLLLLEEEEELLLLLEEEEELLLLLEEHHHHHLLLLLEEEEEELEEEEEEEEEEE EEELLLLLEEEEEELLLLLLLEEEEELL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHH HHHHLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTT TTTToooooooooooooooooooooooo |