NONHSAT123217
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT123217 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3414 nt |
Genomic location |
chr7+:128278644..128289065 |
Exon number |
3 |
Exons |
128278644..128281373,128281901..128282358,128288840..128289065 |
Genome context |
|
Sequence |
000001 CAAGGAGCTG GTTATTGGGC TGTCCAGGCC TCCCAAGCAG CACAGAAATG AGGCGAAGGA GTTTTCCTGC TGCTCCACTC 000080
000081 TGTAAGGAGT TAGAGGGTGA TGTTTGCTCG TTTGCAGAGA GAGATGCCTT GTAGGCACCT CAGGATGGAG AGGACCCTGA 000160 000161 TTCCAATGTC Ctttttttct ttagaaacag gaccttgccc tgtcactcag gatggagttc agtggtccaa ttatggctca 000240 000241 ttgtagcctc aaactcccag gctcaagcag tcctaccatg tcagccttcc cagtagctgg gaccacaggt aagcatcgtg 000320 000321 acactcagtg aattttgttt ttattttttt gtagagatgg ggcctcagta tgttgccacg gctgaccttg aactcctgca 000400 000401 ctcaagggat tttcctgccc tggcctccca aagtattggt attacaggca tgagccattg tgcccAccgt ctctggttct 000480 000481 taaccttcta cttccctctt ccagttttaa agaatgcttg taattacatg ggctctccta gatactccag gataatcttg 000560 000561 ttttaaggtc agctgatgag caacattaat tttatctgca ctcttaattc ccccttccta tgtaaTTGTG CTGTGTAACA 000640 000641 TAGGACATGA GCAATTGGTG GGGGTGGGGG TTATTACTTT GGCCACCACA Gtattttatg ccaggtactc agctaagcac 000720 000721 tggtgaatta agcatgaata acacacactc cctaatctcc atccattcat gggaggagCA CCTCACCTGC CATGCTCCTG 000800 000801 AGAATctggg gagtcaaaga agtcttccat gaggaggtga tgccaaagcg gacaagtgac agagtcgaag ctagctagga 000880 000881 agagagtaga ggtttaaggg gaagcgtatt ataagcagag gatatcaccc acttcagaga ctcccagagg agaaagagtg 000960 000961 tgtgttcaaa gggcagatga ggctcagttg gactccatag cagatgaaat ggagaggggc aagcaatgag gctgccttgc 001040 001041 aaggcagggc agagcagggg ctgttgaagg gtttggactt aatccctgag gcaaggagaa gtgatgtaaa tgggggagta 001120 001121 acatgatgag attaatggat tagagacatg gctcaggctg ctgtagagaa ggcaccaggg agagcagatg gCTCAATGGG 001200 001201 TGTGTAGGAG ACCTCTCACT GAGTTTAGGG AGAGGTTTTT AAAACAGAAG AAGTTTGAGT AATTTAAATG ATGATGGGAA 001280 001281 GGAGCTAAAA GTAGGGGATA GGTTAAAGAT ACAGGAAAGT GGGAGGAAGA ACTGACAAGT GAGGTTCCAG AGAGGGCAGG 001360 001361 AGAAGAGGAG ATTCCCATAG GGGGATTAAC ACtttctttt cttttttctt tctaagacag ggtctcactc tgtcgtccag 001440 001441 gctggagtgc agtggcacaa tcttggctca ctgtagtgta ggcttcccag gctcaaggga ttctcccacc ccagactccc 001520 001521 aagtagctgg aactacgggt gtgcaccacc accacacctg gctaatgttt ctttttttgg tagacacaga gtctcactat 001600 001601 tttgcgctga ttggtctcca actcctggcc tcaagcgatc ctcctgccta ggcttcccaa attgctggga ttacaggcat 001680 001681 gagccataat gcctggcctc tgctagttct gtattctcta gagttgtctt tactttgtgc tagcgtgtcc ctcattgtgc 001760 001761 taatcctctg taaaaattaa tacctttttt tcttttcgag atggagtttc actcttgttg cccaggctgg agtgcaatgg 001840 001841 cgctatctcg gctcagcgca acctccacct gccgggttca agcgattctc ctgcctcagc ctcccgagta attgggatta 001920 001921 caggcatgtg ccaccatgcc cagctaattt tgtattttta gtagagatgg ggtttctcca tgctggtcag gctggtctca 002000 002001 aactcctgac ctcaggtgat ctgccttggc ctcccaaagt gctgggatta caggcatgag ccattgtgcc tggccaaaat 002080 002081 taatactttt tatattaaat ttacatatat atacattttt ttctttttga taccgggtct cacactgtca cccaggctgg 002160 002161 agtacagtgg cataacctct gctcactgca gcctccacct gccaggctca agcaattctc ctgcctcagc ctcccgagta 002240 002241 gctgggatta caggtaagtg ccaccacacc cagctgattt ttgtgttttt tgtagagacg aggtttcgcc atgtttccca 002320 002321 gactgttctc aaactcctga gctcaaagca gtccacccac cttggcctcc caaagtgctg ggattacagg tgtgagccac 002400 002401 cttgctcatt ctagtttaaa ctttggagtg gtttgtgtct cctgattgga ctcCTGCAAA TACAGAATTG ATGCTAGGAA 002480 002481 GGGTACCAGG AGATAGACGC ACACAGATGG GATTTGGGAA TAGGTTTGGT TATCCAAGGA GCAGTGCTGA GCTCCTTGCT 002560 002561 AATGGGATAT GGGATGCTGG TGATTTCCAG TAAGTGACCT CAAAATTACT CAGGCTACCA CATACTGTTG ATTGTGATGA 002640 002641 AATGCCAGTT GAAGCACCTG TCCTGCGAGC TTAGGGGTGC TACAAGTTGA CCACTGCAGC AGTAAAGATG ACTCTGAAGA 002720 002721 ATGGCATGGG aactcttggc ctcaagtaat atacctctct cagcctccca aagtgctgag attacaggca taagccacca 002800 002801 ccctcaaccA AGACTTTCTT AAACCAAAAA AAAATTAAGT GAgattactt gagcccaggt ggtcaaggct gcagtgagcc 002880 002881 tgattgcacc actgcactcc agcctaggtg acagaatgag actgtctcaa aaaataaaat aaaataaaat GCAAATTAAC 002960 002961 CCTTTATGAC ATTCGCAGTA ACTTTCCCTC CTAAGTCTTT GAATTCTGTT TAATTTTCAC ATAACATTTA AGATGTTTAA 003040 003041 GAACTTATGT CTGTCTGTGT CATCCCTTTA TGTCAAAAGA TGTCTTTTTG TCACTTCCAG CTGGATCTAC CATGAAAGAC 003120 003121 CTCTGAATCC AGGAAGAGAG ACTGACTGAG CAACATGTTA TTCAGGTACA AAAAGATTTG GACTGTAAag acagggtctc 003200 003201 catctgttgt ccaaggctgg agtgtagtag tgctatcaca gctgactgca gcctcaacct tccaggctga agcgatcctc 003280 003281 ccatctcaac ctcccacgtg gctgagacta caggtgcttg ccactatgcc caactaatat ttggaatttt cgtatacgtg 003360 003361 gattccagag gggtgacagt gaaacgtgag taagcatgga ttttggtata tgca |
Predicted Small Protein
Name | NONHSAT123217_smProtein_356:565 |
Length | 70 |
Molecular weight | 7836.0811 |
Aromaticity | 0.144927536232 |
Instability index | 69.0305797101 |
Isoelectric point | 8.76995849609 |
Runs | 13 |
Runs residual | 0.0490744726647 |
Runs probability | 0.0481839305369 |
Amino acid sequence | MGPQYVATADLELLHSRDFPALASQSIGITGMSHCAHRLWFLTFYFPLPVLKNACNYMGS PRYSRIILF |
Secondary structure | LLLLEEELLLHHHHHLLLLHHHHHHLLLLLLHHHHHHHHHHHHHHLLLHHHHHHHHHLLL LLLEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLLLLL LLLLLLLLL |
PiMo | ooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTiiiiiiiiii iiiiiiiii |