NONHSAT123457
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT123457 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
2532 nt |
Genomic location |
chr7+:133899987..133902516 |
Exon number |
1 |
Exons |
133899987..133902516 |
Genome context |
|
Sequence |
000001 ATAAAACACC TTTACTATGG TGATAGACAA CTCTGATATT TTCTATGGCG CTGAATCTCA ATTTTTAAAA TTCTGGTTGT 000080
000081 GGCCTCCTAA ATTGATTTCA CAATTTTGTT TGCAACCTGC AGTTTGGAAA ACCCTGCACT GAGTGCCCTA GAGGTTTGCT 000160 000161 TTGATGCTGT CCTTACTTGG AGGCCTGTTA CCAGACTTCC CCCCAGCTCT GGTTGCCTTC AAGTGAGGTT GGATGGGTTG 000240 000241 ACATCATTTA TGCTGAATTC TTCTCTGGGA CAAGGATCTG GTGTATTGGC AGTTATGTTC TTTGTCAATG TGGGGGCTCA 000320 000321 GGATAAGATA CATCCAAAAT CTATACGTAT ACGTTTTATA TAAAGCTTTT AAAAAAAAAA GGCACTTGAG AACAATCTTG 000400 000401 ATCAGCTTAC TTCCTTGCCT TTTGCTCCAT GACAAGCCCG AAAATCATCT TATTACCATA AAAAGATCCA CCAAGTTCCA 000480 000481 CTTCAGATAA TTGCACTATT TATATACTAT GTAGCACAGT ACGTCTGTAA ATGAATTTAA TTGCGTAGTC CAATTTGAAA 000560 000561 GACATAATTC TAGAAATCAC TTTTCTGTAT TGACCAGGCA TTCAGAGAAG AGGATAAGAA GGGCCTAACC ATTTCTTTGT 000640 000641 GTTGATGACA GATAAATGGT GTTAGAAGAT CAAACCTCTA ATCTTAAAAC TGATTATGAG AGTGCAGTCA TGATTTGCAA 000720 000721 AAGCTGAAGA CTTTTTATTA CAGATTGTAA CCTTAGAAAT TCATTATTGC AAACAACACT AAAATTCAAA ATAATCCTTG 000800 000801 AAAATTCCAT TTGCATTACA ATCTAGCCAT GTGACCTTGG GCAAGTTACA GAGTTCTAAT GTATAAAATG GAGGTAATAA 000880 000881 TAGTACCTAC CTCAGTATTT TTATGGGGAT TAAATGAGTT AATATACTGA AAACCACCCA GAACAATATC TAGCACACAG 000960 000961 TAAATGCTTC TATGAGTAGT GTTTGTTCGT ATTAACATGA AAGCAGCAAA AAAATGTTTG CATTTTCCTG TTCATTGAAA 001040 001041 GAGGATGATA CTGTTCAAAC TGGGTGGAAA TATTTGGTAA ATGAGATGGT CTTTGTGAAA ATCCTTTTTT AAAAATTTGA 001120 001121 TAACCTTGAT TTAATTAAGT AACTTAAAAT TAGAATAATA TTGGAAAGAA ATTGCAGTTG AGCAAAATAT TACAAAAATC 001200 001201 AAGAGGTTCT TCAATGGGCA TTCATAGGAG GCATTGCAGT TTGGAGAAGT GAGTAGGGAA ACATCAATTC TGAGATTATT 001280 001281 ATGAATTTCC ATGTGATACA CACATAAAAG ACCTGTAGTA ACATCTGGCA CATAGTACAT GCTCAATAAA TGCTATCTGT 001360 001361 TATTTTTACT ATGATTTCAT TATTGATAAA ATCAAGATCA TTTATATTCT GGGTTTCAGA TTGGTTAGAT AGGGAATGCT 001440 001441 GTCAAGTCAC TTGTCCAGAT AGTAGATATT TTCTTTTCTT TTTGTGGCTC AATTGAGACA AAGACCAGCT TCTACAATTA 001520 001521 CCAGATCTAT ATACCCTCAG TGTCCTAGGA TAAAAATAGA AAAGCAAAGT GAAGAAAGAC AGAGAATGTT TTTGCTGGAG 001600 001601 AAAGTGACCA ATGAAGTAAC ATCTTTGAAA AGGTTATTCT TGAAGGATAA GCCCTTAGCA AGCAAAGATC ATGCTTAGGG 001680 001681 TGTGGGATTG GGTGGCAATC CCATCAGAAA TACAGTTATT TGAACATGTT AGTTGAAGGA AAGGAAATCT TTAGCGTATA 001760 001761 TTGAAGCTTC CTGCCAATCA TTGCTACCTC TTTTCTTTCC CAAAATCTGC TATATTAATA CAGATCATAT ATAGCAAGTT 001840 001841 TCCACTCTTG AAATTTACCT GTTCTATGTG TTTTATCTTC TTTAAAGTGT CAAGTAACTA CTTCATTAAA TACTCATCCT 001920 001921 TTTTTTTTTT TTTTTTTCGG AATTCTGGGC CTTATTGCTC TATGTTTTAA TTGGAACATT CTTGATGCAA GGCCCAAATA 002000 002001 TTGACCCATT AGTTCACCTC CACTGAAGAC ATTACAATGT GTGAAGTTTA CTGGAAAAGA ACGTTTTTGT ACTTTATTTG 002080 002081 CTCTTATGAA TGTAAATGTG TATGTTTTCC TTTTTCTTGA TATAGAAATT GTTTTTGTTT AAATAACTAA TTATTCCTTT 002160 002161 GATTAGACAC TCAAGAATAT AGCACTTCAC TGTTAGTATA GTTTAATAAA TGTATTCACT TTCCCATATA TAACATGACT 002240 002241 ATTTACAACA TTATTACTGT ATTTCCTTGG ACTTATGTGA TAACTTTCTA CTCTAAAAGT TTATTTTGCT ATGGAAATTA 002320 002321 TCATGGATAC TATGCAAAAT TATTATTTTT CTAGTTGATA TTATTCTTTT CTTAGAAGCA CAGATAGACA AGACTTTTAA 002400 002401 GATGTAATTC TGTCCTAGAA AAATAGCTTA TTTTGCCACC TTTAGTTTTG AGATAGCACT TCTTAATGAA CTAAACTTTT 002480 002481 GTCTTAATTT TCCACTACAA ATTATCTATC ATATTAAAAG TATTTAAAAT TC |
Predicted Small Protein
Name | NONHSAT123457_smProtein_1349:1495 |
Length | 49 |
Molecular weight | 5871.9325 |
Aromaticity | 0.208333333333 |
Instability index | 41.0645833333 |
Isoelectric point | 5.91265869141 |
Runs | 10 |
Runs residual | 0.0427631578947 |
Runs probability | 0.0375640346229 |
Amino acid sequence | MLSVIFTMISLLIKSRSFIFWVSDWLDRECCQVTCPDSRYFLFFLWLN |
Secondary structure | LHHHHHHHHHHHHLLLLEEEEEELHHHHHHEEEELLLLLEEEEEEEEL |
PRMN | HHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | i??????????????????????????????????????????????? |