NONHSAT123578
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT123578 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS) |
Length |
1835 nt |
Genomic location |
chr7+:137003339..137011700 |
Exon number |
2 |
Exons |
137003339..137003604,137010132..137011700 |
Genome context |
|
Sequence |
000001 GTGTATGCTG CGAATTAATA CGTGAATGAA CAAATGACTA CAGGCATTAT CCGAATGATA TGATCCTCCT TCCCCATCTT 000080
000081 TCTGGGTGTC GGCCTTCATT CACCATGAAG TTGTAAACAC AACATTGATT TTGGAGTCAG ACAACCTAAG TTCAAATCTA 000160 000161 GCCTTTGCTA ATTACTGGCT GAAATCATTG AGAAATCTAC TTAACCTGCC TGAGACCTCA GTTTCCTTAT TTGTAAATGG 000240 000241 AATAGTAGTG CCTCAAGTGA GATAAGGAAG AAGGATGCCT GGAGTGGGAT AAAGAAAATA TAGAAAAGGA AGGGAGTGTC 000320 000321 TTCACATCCC AGCAGGGCAC ATGGAGGAGG AGGAGGAGGT GCTGACTATG GACAGCAAGA AGCAACATCA CCATCACAAA 000400 000401 ACACCCACCC AGGGCAGGGG CCCTTTCAAC AAGGAGCATA AGAGACTGTT TCTGCCTCTG ATGGAAGCCC AGCATTTTGT 000480 000481 TTTTCTCCAC ATATTTTAAT CAATATTTAC CAAGCCATAA CAATCTGGCT TTCACTGTCA CCCTAGGGTT GAGTTTCATG 000560 000561 AGTAACTACC TTTTCCACTG GCTGCAGAAA TAATGACTCC ATGTATGATT GGCAGAAGGT CATTCATTTG AGCATAGGAA 000640 000641 AACAAGCAGT TTCAAGAAAA GAGCTGGCAT CTCTGCATGA GTGAATCAGT GCACATCTAA AATGCAGTTA CTGAAATTAT 000720 000721 AGACGCCTCT CCTCGGCCAA TTGGCCTCCT TTGGAAGATA TGGCCTCACA CCATTCCATG TGCATGTGAA ATGTCTAGAC 000800 000801 GTGATTATAG AGTTTTCTTG AGAGCTGATG CATCCAAGGA ACATTTAAAG TAAGAAGCAA AGTAATGAAA AACGTTTCTC 000880 000881 AGAAAATAAA AATTGTTAAT ATGGTCTTAC CACATTCTCT AATGAAAGCA TGTTGTGAAT GCTCAGGAAG AAGAAGGTAC 000960 000961 AGTAATGGGA CTAGAAATCT GCAGCTTGGA TGGGAGCCCA GTCACCAATT ACCAAGTGCT ACAAGCCTGA GGCTACTTCT 001040 001041 CATTGAAAGG GCCTCCCAGG CATTGAGGGT GTCCACAGTT CAGTGAGACC TCAGAAGCCT GCACGTAGTT CATGCTCAGT 001120 001121 TCTTAGGATA ATCCTGTCTC TCCACAATTC CTTCAGGCTT GCAACACTCT CTTACCCCAA ATCAGCTCTT CCCCTACATT 001200 001201 TCCCCTTTCT ATCAATGGCA CTAGAATTCT CCCAAATTGA TCAATGTCAA CATCTCATTG TTTACTCACC CTTCATGTAC 001280 001281 TCACCTCCCA TTATAATGTC TAGATTACAG ATAGCCTTTA TTTTACCTCA CGGCATGTCC ATAAAGAATC TGTCTTAACT 001360 001361 ACCTACTTAC ACCAAGGCAT CAGCAATTCA TTTATTTATT CATTCATCCG TTATTGTATG AAGTATTGGC TAAGAGATCT 001440 001441 ATAGTGAAGT GGGGAGAGAT AGTCATTTAA AGTAACTGTC ATATAAGAAT GAGTAAGCAT TCACACCGTT GCTTCCACCA 001520 001521 GAACTCACAC TTTCTTCTTT ATATTTTTCC ATCTTTAAAC ACAAGTTAGG AGACACTACC TCCTGGAAGC CTCCCCTGAA 001600 001601 TCCACCCTCA GCTGACTAAA ATGTCTCTCC AATGGGCTTT TACAAGTGCA TATCTAGTTC ATTGCACTGA AATTTCACTG 001680 001681 ATTAGCTATT CATGTGCCTG CCTGCTCCCC CCAATTAGAC TGTCCTATTC AAAAACAGGG ACTGTGTCAT ATTCATCTCT 001760 001761 GTATTCCTGA TACTTAACAT AGAGCCCAGC TCATTGTGTG CATTGCATAT TTTTAAATGA ACACATGAAT GAATG |
Predicted Small Protein
Name | NONHSAT123578_smProtein_1214:1357 |
Length | 48 |
Molecular weight | 5410.4213 |
Aromaticity | 0.106382978723 |
Instability index | 75.7382978723 |
Isoelectric point | 6.69000244141 |
Runs | 6 |
Runs residual | 0.0386170212766 |
Runs probability | 0.125434257787 |
Amino acid sequence | MALEFSQIDQCQHLIVYSPFMYSPPIIMSRLQIAFILPHGMSIKNLS |
Secondary structure | LLLLLLLHHHHHEEEEELLLLLLLHHHHHHHHHHHHLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLL |
PiMo | oooooooooooooooooooTTTTTTTTTTTTTTTTTTTiiiiiiiii |