NONHSAT124030
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT124030 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2914 nt |
Genomic location |
chr7-:149244271..149255869 |
Exon number |
5 |
Exons |
149244271..149246465,149247959..149248037,149248665..149248917,149249892..149250107,149255699..149255869 |
Genome context |
|
Sequence |
000001 CGCCCCAGCA AGCATCCAGG AGAGCCTGCC TCTTGGAATA GAAATCAGAC ATCCCACAGG AACTCTGAGG TTTTCCCACT 000080
000081 GCTGCCAGAT GTATGCAAGG AACACGTGAT CTTCGTAATT CCAGAGCGGG GCAAACTGCT TGGCACCTCT TCAATAGGTG 000160 000161 ACATTCAATG Atagatctct ggcttcctgc tctgtttgtt ctggttgccc tggaaagcct gctgctcagc ccatgccccg 000240 000241 ggacttcctc caccctcacc aggacattct ttccatctct tgtctcctgt gtgcaagtcc ctttctcctg gattccatgt 000320 000321 cttgaatgtt tcttaattta cttcctcatt ttggcagagg atgtcctcca gttgttttct gggaatgCTA ATATGCAAGT 000400 000401 GAACCAGTGA CCTGCAGTTC TGCCCACACA GGGTTAATAA ccaatcagat tctctctttt caagatggtt aacataacag 000480 000481 acaccaagaa agggaagagg agccgacagc agagggggaa gctgaaaaga cgcacaaaga atggccataa AAGATATGAG 000560 000561 TATGTTGAGT GATTAGTGAT CGGAAACTAC GAGTGATATG GTACAGGTGT TTGTAGAAGA ACAGTAAAGC CATTGATCAG 000640 000641 GCAACCCCAG CTTTCCAGAC AGTCACTTTT CCCAGTGGTC ATACCTGGTC TGGAAGATTC CCCATCATCT CGAATAAAGC 000720 000721 TGTTGTTGCT TTTAACTCCA TGGAGAGACC GAATGGAGTG AGCCCAGCAG GGCATGCTGG GCAAGAGAGG TCCCCCGAGT 000800 000801 CCCAAATAAG AATTTCAACT AGTATAAAAC GAGGCAGCGA ACCCACACGT GGAAGTCTGA TACCGCTTGC AGAAGGGAAT 000880 000881 TGAATAGATG TCTCCCTATT GGTAAGGATG TGGTTTTATT GACTTGAAAT AACAAAGCCC GCAAGCAACA ACTGATCATC 000960 000961 CGCGGGATGC TGCCACAAGG AATAATTGAG CACTCATTCA GACACAGGGG AAACCACTGC CTCTTTCAGT CTTTCTCCCA 001040 001041 GATTCCAACA GTCAGTGTTA CAGCATTTCA CCTTGTTCAC CTCCCTGAGA AGACGTTGCA GCTCACTCAC CCCAGTGGGC 001120 001121 ACTGGGAGCC TCTGCTCAGG TGGGAGACAG ATGCCCCCCA CATGCACATC TGGTGTTTAT GAAGCAGATA CTGGGGCTTC 001200 001201 ATAAACACAG AAGGGGCAGG GAAGTAGCCC CAGGGCATAG TGTGGGGCCT CCTGACTAAA AGTAGCTTGC AAACCCCTGC 001280 001281 CTATAACAGC CACTTCCTGG CAGTCATTGT GCCACTTAGG AGCCCTCCTC ACCGCTCTTC CTTTAGTTCC TTCACTCTGT 001360 001361 ATAGACCCTG CCAGAGCAGC TCAGGGTGGA GCAGCTGCAG CCATGGGACC TGCTCCAGGC AAGGCCCTAT GCTACACAGT 001440 001441 CCCTGGGGGT GAGGATTCCA GAGGAGTCAA TTCCCTACCC GCCCTTCCAG GGGATGGCCG AGATGAGCGT TCCCACAGGG 001520 001521 AAAGTGAAAG TTGCAAGGCt gttgcggaaa caccaggggt tccatctagg tcttgctgct catctcacag aaagccagtc 001600 001601 actgagacaa gtattgtcag ggaagaaggc tttatccagg tgctacagac agggtgaaca agagatcagt ctcaaatcca 001680 001681 tcatcatcaa ctgactaaaa ttaggggttt atatagcagg gaagaaatgt aactacatgt gggaaaacag ggattaacga 001760 001761 ggggcaagga agaggagttg gccaacaggc agcaggtggt cacctgggga atcatgatgg gtgaggggtc tggcttctca 001840 001841 ctttccagat gtggggatct ggtaaatttc agtttcttga taccgtctgg gaggattgct ggctggtttc ctgagaaagg 001920 001921 aattcagatg acataaatgt aaatttctcc ttgggtttca agactgagag ggtcaatttc taggtttatt caagaaaaac 002000 002001 cataaacatc agttctatgg gacaattggg cccatttcaA GGCTCTGAGG ATAAGGGTTA ATGAGGGGAC AGAGTCGCCT 002080 002081 GGAGAAGTTC ACTGGGGCCT ACAAGAAACT AGAGAGGCTT CCTGGCAAAG CTCTATGCTG TCTATCCTCT CTTCTCTCCT 002160 002161 TGCAGGAAGA TTCCAGTATA ATAGACCCGA GGTGAAAAGG CTTTTGTTCA ATAAGTAGAA AACTGAAGGG GGGTGggagg 002240 002241 cacatggatt tgaaccagag accgcttggc ctgcaggcaa atgctgtacc ttcagttgca ccccTCACTT GTTACAGCTG 002320 002321 TTTCTGATAA GCACTTGTGC AGCCCCATCA GCACCTCGAT TTCTTCTTGG TGAGTCCATG GGAACAGCCC CACTGCAAAC 002400 002401 AACCCATTCC TGCTCTCCTC TTTCCTCTAA ACCTCAACCT CCTCCTACCT GGCAGTCCAC AGGCCTACAG CTTCTCCTCA 002480 002481 GTGGGAAAGA CATCAGCTTG GAAAACCACT TGGAAAGCCA ACGTTATCCT AGAAAAGCTT TTTAAATGAC CCAgcaggac 002560 002561 aagtctccgg atggccttgg ccaacccggt gcttccctct tttcttggtt gtagttctca gaataactag agaatgtact 002640 002641 gggagtgttg tcctgagata aggaggaact gtcctaaacc tggactctgt tcccatcaca cctagaacag gatgtcctgc 002720 002721 aacgctttag cccaatgatc caagttgccc ttggggtata aaacttgaca gcagagggcg ttcagggtcc ctcagctgca 002800 002801 gtgtgaagtg ggacacacag gtgagactcc atctgccctg ggcaggttcc tgagccttgg gggaccagtt caccctacat 002880 002881 cccaggcttc tgttgtccct tgcctgcctg taag |
Predicted Small Protein
Name | NONHSAT124030_smProtein_167:409 |
Length | 81 |
Molecular weight | 8926.524 |
Aromaticity | 0.125 |
Instability index | 54.865 |
Isoelectric point | 3.83416748047 |
Runs | 11 |
Runs residual | 0.00131578947368 |
Runs probability | 0.0428369546017 |
Amino acid sequence | MIDLWLPALFVLVALESLLLSPCPGTSSTLTRTFFPSLVSCVQVPFSWIPCLECFLIYFL ILAEDVLQLFSGNANMQVNQ |
Secondary structure | LLLLHHHHHHHHHHHHHHHLLLLLLLLLLHHHHHLLLLEEEEELLLLLLHHHHHHHHHHH HHHHHHHHHHLLLLLLEELL |
PRMN | LHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHH HHLLLLLLLLLLLLLLLLLL |
PiMo | TTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTT TToooooooooooooooooo |