NONHSAT124262
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT124262 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
5086 nt |
Genomic location |
chr7+:151837804..151842813 |
Exon number |
1 |
Exons |
151837804..151842813 |
Genome context |
|
Sequence |
000001 GTGGTGCCCC AGCTGCATCC TCATGAAGCA CATCCGGGAG CACATGGTGG GAAGGGCCAT GTGAGAGACT TTAGTATGTG 000080
000081 AACTGATTTA TCCTCTGAAC AAGCATCTTT GATTATCTGT TCTACTCCAG ATACAACTCA CAAGTGAATG AACCAGAACA 000160 000161 CACAAAAAGT ATGTATGGAG ATCAATAGAG TGTGGTTTAA GAATAAACAA GATCAGTGGA AATGAAGAGA TTCCAAATGG 000240 000241 GCCAGGCGTG GTGACTCATG CCTATAATCC CACCACTTTG GGAAGCCAAG GCAGGCAGAT CCCTTGAGGT CAGGAGTTCA 000320 000321 AGACCAGCCT GGCCCACATG GTGAGACCCC GTCTCTACTA AAAATACAAA AATTAGCTGG GCATGGTGGC GTGTGCCTGT 000400 000401 AATTCCAGCT ACTAGGGAGG CTGAGCCAAG AGAATTGCTT GAGCACCAGA GGCAGAGGTT GCAGTGAGCT GAGATCAAGC 000480 000481 CACTGCACTC CAGCCTGGGC AACAGAGTGA GACTCCAGAG GCTGAGGCAT GAGAATCGCT TTAATCTGGG AGCCAAGATG 000560 000561 GCACCACTGC ACTCCAGTCT GGGTGACAGA GTGAGACTCC ATCTCAGAAA AGAGAAATAG ATCCCTGCAT GTATGAAAAT 000640 000641 CTAACGTACA GTAGTAACTG GTATTAAAAT TCAGTTTATA GTCAAGATTT CGTGGGGTTA GAAGAAAAAG GCCAGGTGCG 000720 000721 GTGGCTCACA CCTGTAATAC CAGCACTTTG GGAGGCAGAG GTGGGCGGGT CACAAGGTCA GGAGTTTGAG GACCAGCCTG 000800 000801 GCCAATATGG TGAAATCCCA TCTCTACTTA AAAAAAAAAA AAAAATTAGC CGGGCATGGT AGTACACACC TGTAGTCCCA 000880 000881 GTTACTTGGG AGGCTGAGGC AGAAGAATCG CTTGAACCTG GGAGGCAGAG GTTGCAGTGA GCCGAGATCG TGCCACTGCA 000960 000961 CTCCAGCCTG GGTGACAGAG GAAGACTCTG TCTCAAAAAA AAAAAAAAAA AAAAAATTCA TGCCAGTCAC GGGGGCTCAT 001040 001041 GCCTGTAATC CCAGCACTTT GGGAGGCCGA GGCAGGTGAA TTGCTTGAGT TCAGAAGTTC AAGACCAGCC TGGACAACAT 001120 001121 GGCAAAACCT CATCTCTAAA TAAATATTTT TAAAAATTAG CCAAGTATTG TGGCATGCGC CTGTAGCCCT GGCTACTCAG 001200 001201 GAGGCTGAGG TAAGAGGATC GCTTGAGCCC AGGAGATCGA AGCTGCAGTG AGCTGAGATT GTGCCACCGC ACTCCAGCCT 001280 001281 GGGCGACACA GTGAGACCCT GTCTCAAAGA AGAAGAAAGA AAATCAGTTA AAAATGAGTG GGTTACTTCT AAATGGCCCT 001360 001361 TCAACAACTG GTTATCCAAT GGAAGAAAGC GAAATTGTAT TTTAAAAATG TTATGCAAGA AAACCTCTAG AATCCGTATA 001440 001441 TAATCTAGGG TCTTGACCAA GACTAGATGC AACAGAAAAT TATGTATGTT TGTTTATATA AACAGTAACT TTTACAAGAA 001520 001521 AAAAGATGTC ACACTTGCTG GTAGGCAAAG GATATTTTGT AGGGGAAAAT TCTGAATAGT GTAAACTGCT AAAAATTGAA 001600 001601 AAATGGACAA AGGATATGAA TACGCAATTC CTATGAAAGC AAATCCAAAT GGCGGACATG AAAAGCTGCC TATTCAATTA 001680 001681 AGGTAACATC AGTCTATATT TATCAGACCA ACTAAACAAA AAAATAGTAA CACCAGCTAC AAATGGGAAA CAAGAAAACA 001760 001761 GTCTCACATG CTGCAGGAAG AAGTGTGCAG TAAGAGACTT TTTAGAAAAC TGGCAATATC TATTTAAATG AAAAGTACAC 001840 001841 ACGCTTTTAC ACAGAAACCT CACGTTTGGG AATATACCCC ATAGGAGTGA AACTATTAAT TCATTGTGAT ATTTGTACAA 001920 001921 GATATAGCAA CACTGTTTGT TATGAGAAAA ATTATAAATC AAATACACAC TCATCAGTAA TGCAATGGTT TAACTGCAGT 002000 002001 TCATCAACAC TATGGAACAT CAGGTAACCA TTCAAAAGAA TGAAATGAAG CTACGTCAGT TGATCGAGAG GGACCTCTGA 002080 002081 TTATTACAGA GAAAAGGAAG ACGGAGAAAA ATAAATATAA CATGATTCCA TTTTTATATA TGTACATAAA AGTGTATATA 002160 002161 GTTCTAAGAT ATTAGCACAG AAAAACAGGA TACATATTAG ATCATCCACG GGATCCCCAG GGAGGTGGAC AGATGGGAGG 002240 002241 GTGGCAGGAT GAAATAAGTA AAGAGACAGA AACCAGAGCT CTCAAAAATG CTTCAGGTTA AAGGTGACAG GTTGAACACA 002320 002321 GTTAAGATAC CCACTAAAAT CACAGTAAAA GCACACTCCT CGAGAACACG AATGGGTATA AGAGTGAATG GACTATTTAA 002400 002401 AATGAAAAGT AATTGACTTA GCAGGGGAAA GCTAGAACTG GAAGGAGTAG AGGCAAAGCA CTAATTCACC CACAGAATCC 002480 002481 GAGAGAGGCT CAACAGAGAG GGGCAACAGC AGAGAAAACA CAGATACTCC ACTCATAATG TAAAAACAAA ATATCAAACA 002560 002561 AGATCAAGAG CAGAAAGGGC TCGTAGCTAA TCTCTAAAAA TAGACAAGAA AGATTAGCAG ATAAAGTAGA GGAAGTCTCA 002640 002641 GAAAGAACAG AGAGACAAGG AAACAAAGAA CAGAAGGGGA GAAAGGATAT AAGACAGAAA TTACTCTCTG ACATGCATGA 002720 002721 GAATCATCCA GGAGGCCCCA CCTCCAGAGC TGGATTCAGT GAGGCTGGGC TGGGGCCCCC GAACCTGCAC ATCCTAACAA 002800 002801 GCTCCCAGGT GACACTGCTG CTTCTAGTCT CAGGTCCACA CTGTGAGATC CTGAATCTCA GGGGTTTTAG TGCAAACACA 002880 002881 GAGGAAACAG AGGGGCAGAA CTTGCAAAAG AATGAATACA AAACACATTT CTCAGACGGA AGGTCACGAT GCTCCAGGTT 002960 002961 GAAAGGGCTC ATCAAGGGAG GAAAGCAATC AACAAAAAGA CCTCCACTGA GGTGTAGTTC TGTGAAATGT CCAAATATCA 003040 003041 ATAAAGAGAA GATCCTACAA ACTTCTAGTG AGGAGTAAAA GGGTTCCAAC AAAGGAACAA GAATCTGAAT GAGTATAGAC 003120 003121 AAAGGAACGC TGATCCAGTT TATAGGGTAA AGATACTTTG CTGGCTGCTG AGAGGGAACT GGATGGGAGG AGACAGCCAG 003200 003201 GCCTGCAGTG GTACAGGCAA GTGATATGTG GCTCAAGATA GGGCTGGTAA ACCTAAGAGT GGATCTGAGA GAATTTTTAG 003280 003281 GAGAAAACAG AACTCGATGA TGCTTTAGGT TTAATCTGGC AGTACTGAGG CCAATGTACA CAAACGGTAA CATCACTCAG 003360 003361 CAAGGAGCTT GTAGGATGGC GGGGTTTAGG AGCTGGACAA GTTTGACAAA GTAAGAGCTT TGTAATTCCA TTCTGAGACA 003440 003441 TCCAAGGAGA AAAATGCTGA ACAGGCATTT GGATATTTGG GTCTGCAGCT CAGGAAGTAT GGACTATAGG TGTAAACTTA 003520 003521 AATGCTTAGC CTATACACGG CCTTACTTGT AAGATATTCC ACAGTCTACC AAAAAACATG CACTGATTTC ATGAAACGGT 003600 003601 AGCTTCCAAA AGATAAGGTA ACTTCCAAAA TTGGTGTACC TTTGGAAAAT ATTTTCATTT GTATTTCTCT CAAGTGCTTG 003680 003681 AAACAGCTCT ACTGAGCACT CCACAAATCC AGTGTGTGCA AATTACAATG CTACCTGCCT CCCAGGAGCT CTCAACAAGA 003760 003761 TGCAAAGATG TGGATTCCAC TGGTCTGCTT TCCCTTTGGG GAAGCCAATC ACCAAGTCCC AAGACTACAT ATTAAATCCC 003840 003841 TAGTGTTACC AAGGGACAGG ATTTGATACG ATTTTGAAAA CACGTTTCTG TCCCTGCAGC TATGTGAAAT CATTTTCACA 003920 003921 TACTGGACAT CAATAGCTTC AGATTGCTAG ACTCCACCCT GTCTCTCCAC TTCCTGTACA CAAAGTATTT CTTCACCTGA 004000 004001 ATCCGAGACC GTGCCAGATA CACATTGGAT TTCCATTCAG TTTTCATCTT CCGGTACTGC GATGACTTGG AGTGAACAAA 004080 004081 CTGTTTACTA TAAGGTGCGT TCAGTTCTCC AGTGACTGTG CTCTGAAATG ACTTTGAGGT GCTGGTGCTG TTTAAGGTGT 004160 004161 GAGGCCTGCA GACAATGGCA TATCAACAGG AAAAAAATAC AAGGAAAACT GAAGATACCT CTGAGTAATG CCCAAAACCA 004240 004241 GGTTAATTCA GATTCTTACT GACAGAAACA TACATGGAAA GCTGCCTAGC AGAGACACAC GGCGAGTTCT CTTATGTAGT 004320 004321 TGGGCACATA CACAGCCAGA CAGCAGGGTT TGTAAGCAGC AGACAAATCA AGCACAGGAA ACCACTAATA CGCCTAGAAA 004400 004401 CCCTGGGCTG TACTATGTGA AGTTAAAACA AAATACCTTA ACACAAACCT CTTGACATGG GCACTCATTT TAGGTTCAGA 004480 004481 ACGGGCACAA CCTGTGGGGT TAACGGCAAG AGGAAGTTCC ATGAGAGGAT TTCGGCCGTA TCGGAAGGTA TAATTTTCAC 004560 004561 ATGCCTCAAC CCCAGGAAGC TGAAAAGAAG CAAAGCAGAC ACAAAGTCAC CCCATCTGAT GGAGACTACA GACAATCTCA 004640 004641 AGCTGGTCAA AGGATGGCCC ACGACAGAAA TAACTCATCA GCGTTTTCCC CGATAATAAA ATGGTCTTCT AGCTTATGTT 004720 004721 AACACTATTG GCCTGCAGGT AGATCTACTT AAATATGAGT ATGCAAATTC AGTTTCAAAG CCAAACTTAG GTAAACCCTG 004800 004801 CCAAATGCTC CTTGAAGAAA AAGATTAGCC CATGCAACAA ACACTGGCTG ACCAATATAC ACGCTTGTGT GATTTCAGGG 004880 004881 CCTGACTGAA ACACACAATA CCCACAAACA CAGGGCATGT AATGATTCGC ATTGAGTTCT TTCCCCTGTA TTAATGCCAA 004960 004961 CTTTTATATC TCTGTCTGGA ATTTTACAAT TAAAAACAGT TAAAAAATCA TCAAAAAAAA AAAAAAAAAA AAAAAAAAAA 005040 005041 AAAAAAAAAA AAAAAAAAAA AAAAAAAAAG GAAAAAAAAA AAAAAA |
Predicted Small Protein
Name | NONHSAT124262_smProtein_4127:4261 |
Length | 45 |
Molecular weight | 5238.111 |
Aromaticity | 0.0681818181818 |
Instability index | 48.0113636364 |
Isoelectric point | 9.49786376953 |
Runs | 7 |
Runs residual | 0.00401069518717 |
Runs probability | 0.0413354531002 |
Amino acid sequence | MTLRCWCCLRCEACRQWHINRKKIQGKLKIPLSNAQNQVNSDSY |
Secondary structure | LLLEEEEELLHHHHHHHHHHHHHHLLLLLLLLHHHHLLLLLLLL |
PRMN | - |
PiMo | - |