NONHSAT124371
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT124371 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1863 nt |
Genomic location |
chr7+:155192617..155194479 |
Exon number |
1 |
Exons |
155192617..155194479 |
Genome context |
|
Sequence |
000001 CAGCCCCAGC TCTGGTGCTT CTAGATAGCT GGTGAACCTC TGTGCGCCTC CGTCTCCTCG CTTACAGAGG TAATAGTGCT 000080
000081 TGCCTCATTT GGGTGTTATG AGGATGAGGG GAAAAGGACC AACCCTGTGC GATGCTGGGA TGTGGCCAGC ACCCTGGAGG 000160 000161 CAGCCCTAGA AAACTCCCTC CCACCAGCAG CCTAGAGTCC ACAGCATTCC CACGGTGCCC GGGGCCGGGC TCCCCCGTCC 000240 000241 CATTGCCCTG CCATCCTGGG GCATCACCCT CACCTGGGTG ACTGAGGGGC AACAGCCCCA CATCTGTGCT GCAGGTGGAG 000320 000321 GGAGTGGGAA ATGAGAGCGG ATGGCAAGCA GCCTCCTCCA TGAGGACGAG TCAAGAGGAG AGGGCGTCTC TGCACACCCC 000400 000401 CCTGCCACCC CAGCTGCAGC CCCGCTGACA CTCGTTGGCC AGGTTCCATT GCTGAAAGGA GTTAGGGGAG TCTGGACACC 000480 000481 ATGGGACAGT TGGCAGACTC AGCCCCAGGG TGTAAAACAC AAAGCAGCTG TCATCTCGGG GCCAAGGTTT GCTTTGCGAA 000560 000561 AGAAGCAGAG ATGAAGGCCA CGTGGAAGCC TCTGTTCGCT TCGTGCACAC GATTCTGCAC CCACAAACAG CCACGGTGCT 000640 000641 AGGGGTTTCC ACATGGTGTC CCCTTGACGC TCACAGAACT CCGGGGAGGC TGTGAGGTCA CCCCATTTTC TGGATGAACC 000720 000721 TCACAGTGGG AGAGGGATTT GTCACGGTCA CACAGTCCAA GCATGTAAGA GAAGAGGTGC CTTCAGGACT GGCACCCAGG 000800 000801 CGTCACTCCT GTCCCCCACT CCCTCTGCAG AAGCCCCTCA AGCCCACCGT GTGCCTGTTG ACTTTCGCCC TGTGCAGCCT 000880 000881 GCTCCAGCTC CTGGTGCTGT GCTGCGTGTA CCATGCGTGC CCCTGTGGCA ACGAGTCACC GACTCATCTC GTTTCCTTCC 000960 000961 CGTGCAGATG CTTCGGGTAG CAGCCCAGCG CTCTTCACTG GACTGAAGGC ACCTCTTCTC TTTAGAGAGA GAACATTTTC 001040 001041 AAAGGTTAAG CCTAAAAATC AGGACAGATT TTACTTTGTT ATTGTTGTTT CTTGAGGCCT AATTTTTAAA AAGCCTGTGT 001120 001121 GCTGGCTGCT GATGGCCTTG ATGAGAAAGT GGCCGTCAAT TAAACAGACA AGGGGGAACC GAGGAATCCA GGTCAGCACG 001200 001201 ATTTCCTGAT CTGTGGCAGT GACTGTGACC TGACTGGACT TGAGCTGGAA CTTCAAATAA CACCATTAGG TCCTAATCAT 001280 001281 ATCAGAGGTG ATCTAACATG ACTTCCCACA CCATCCCCTT TCAAAGATGC AAGTCACATG GGCATGTCTG TAAAATGCTG 001360 001361 AAGGCTGCAC CGTGTGAGCT GCACAAATTC AAAGTTTTCT GACTTTGCCA GCCCAGTAAC ACTGCCAGGT GCCAGCTTGT 001440 001441 GGCATTTCTG TCAGAAACCC AGCTGGCATG AAAGTGGGTT TTTCATCCAG CCTGGAGTAG CCCCCTGCAT TCAGAAATTC 001520 001521 TTTGCCTGAC TACAGAAGTC TAAATCAGGA CTCACTTTCC CCCGAGCTAG AGGAGGAGGA ATGTGAAGCC TTGGAAAGAG 001600 001601 TCGGCACCAT TCTGGGAGTC AGATTAGTAC ACCCCAAGAA AGGGAGAGTG GCTGGGCCAG CTGCGACACA GTCCCCAACC 001680 001681 GCTACCCGTT CCTCCACCGC CCACCAAGCC CAGAGCAGCC TCCCTCAGCC AGAAGACAGC TCGGAGGATG GAAGACTGTT 001760 001761 CAACTTGTGG CTTAAGCACA TTATTAAAAC CAAAGAGGAA AATTCTTTGA AGAGATGGGG TGGAGCTGAA TTTAAGAGAA 001840 001841 ATAATAAAAA CCATGACCAG GTT |
Predicted Small Protein
Name | NONHSAT124371_smProtein_713:979 |
Length | 89 |
Molecular weight | 9591.3463 |
Aromaticity | 0.0568181818182 |
Instability index | 60.5375 |
Isoelectric point | 8.43939208984 |
Runs | 15 |
Runs residual | 0.0390909090909 |
Runs probability | 0.0235647412119 |
Amino acid sequence | MNLTVGEGFVTVTQSKHVREEVPSGLAPRRHSCPPLPLQKPLKPTVCLLTFALCSLLQLL VLCCVYHACPCGNESPTHLVSFPCRCFG |
Secondary structure | LLEEELLLEEEEELLLEEEELLLLLLLLLLLLLLLLLLLLLLLLLEEEHHHHHHHHHHHH HHEEEEELLLLLLLLLLEEEELLLEELL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHH HHHHLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTT TTTToooooooooooooooooooooooo |