NONHSAT124461
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT124461 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
4049 nt |
Genomic location |
chr7+:156951686..156985171 |
Exon number |
4 |
Exons |
156951686..156954001,156956324..156956554,156978788..156978902,156983785..156985171 |
Genome context |
|
Sequence |
000001 GATATTAAGT CCGTTATCAA TAGAGTGTGA AATAATCACT CCTGTGAAAG GCGGAGACTT AATTCTCTAG CCTTGTGAAG 000080
000081 TCATGGGCGG TAACTACCAG CACCCACTTC TCCTTCATCC TGAAAGCTTG TAGGTAGGAA AGTCTCTCTC TCCTTGACTG 000160 000161 TTATCTCAAG AAGAGTGTCA CATCTTTGTG GAGTCAAACT TTCACCATGG CATACACACC ATGATTGTGG AGGAAAGAAT 000240 000241 TGTGGAAAAC TTGAAAAAAG TATTTTGAAT ATGGCATTTA CAAAGTTAGG AGTATTTGAC ACAGCAGGCA TGTGGGGAAA 000320 000321 AAAAGAAAAG ATTAAAAAAA AAAAACAGAA TTAGGATTAA AGGTCTCCAT GAATGTTTTC CTAAACCAGT TGGTGGCGGT 000400 000401 GAATGGATAA AGACAGTCTC CCCCTACCCT GTTTTATTAA TATGTGAATA TTACCAAGTA AAAGGACACA TTCAAAAGAT 000480 000481 CAGACTGTGG ATGGTTTCTT GAAGCAAAAG TTTGTTAAAG CAAAATGGCA TTTTGGTTAG GAATTCCTTT TCAGAATCCA 000560 000561 GTTGTATCAG AGAACGTGAT TAAATACCAT TTGCAGCTGG GTGCGATGGC TCATGCCTGT AATACCAGCA CTTTGGGAGG 000640 000641 CTGAGACGGG TGGATCACTT GAGGTCAGGA GTTTGAGACC AGCCTGACCA ACATGGTGAA ACCTTGTCTC TACTAAAAAT 000720 000721 ACAGAAACAG CCGAGCGTGG TGGCACATGG TAATCCCGGC GGCGGAGGTT GCAGTGAGCC AAGATAGCCC CACTGCACTC 000800 000801 CAGCCTGGGC CAGAGCGAGA CTCTGTCTCC AAAAAAATAA ATACCATTTG CTTGCCTGAT CTAATTACAG ACATGTAAAT 000880 000881 CAGAATTCTT TGGTTAATAT CAAAATTTAA AAATAAAACT GTCTAATAGA GCCTAATCTT CCTCTTAAAC TAAGCAGCGT 000960 000961 AGCGTCTCGT ATTCTTTTGT TGTGATTATA AACAGTTTCT TTTACCTTGA GGAATCAAGT TTCAGATAGG ACTTTTTATA 001040 001041 AATAAACTTG TTAGATTTTT ATGTAATTCC GTAGTTACTT TTTTTTTTCT TTTTTTTTTC TGAGATGGAG TCTCGTTCTA 001120 001121 TCACCCAGGC TGGAGTGCAG TGGCATGATT TCGGCTCACT GCAACTTCTG CCTCCCAGGT TCAAGTGATT CTCCTGCCTC 001200 001201 AGGCCTCCAA GTAGCTGAGA CTACAGGTGC GCGCCACCAC GCCCAGCTGA TTTTTGTATT TTTAGTAGAG ACGGGGTTCC 001280 001281 ACCATGTAGG TCAGGCTGGT CTCGAACTCC TGACCTCAGG CGATCTGCCG GCCTTGGCCT CCCAAAGTAC TGGGATTACA 001360 001361 GGTGTGAGCC CCTGCAGCAG CCACTTTCAA ATTTAACTTT AAAAATACAG TTTTCATTGT ATTTAATTTG GGGGGATGCC 001440 001441 TTCTGTTTGT GACCAGTGAT GCTGTTTTTC TGTTTAGTGA TGAAAGATTT CCCCTTAAGA TAAATATATT TAGGTTAAAA 001520 001521 AGAGTCTTTT TGGCAAGACT AACACAATAG TTGATTGTAT CATTTGTATG GTACCAAGTA GTAGTTCATT ATGCCGTTAT 001600 001601 GTTTTATTAC TGAGCCAGTT GATGTCTTAG TTGGTGTCTG CAAAATTTCT CCCCTTTAAA TTTTCTGTCT TTCCCTTGTT 001680 001681 AATTGATCTA TATCTTGAGA GATACTTTGA GACTAGGCAA ATCCTGTTTC TCCTCAAACT TTTGCCCACT AATTTTAGCA 001760 001761 TACATTAGTA GATCTTGTCT GCAGTGTTTT TCTGTTTTCT GCTTTTCTCT TTCCTTCTAC ATTTTTAAAC TGGATTCTGT 001840 001841 GAGGAAAAGA GTTTTCTTTT CCTTGTTTAT TGATTTGGTT ATTTATGTAA GTATTGAGTC CATGATGCGT GTTTGTGCGT 001920 001921 ATAATCCTAT GGATTAAAAT CTAATGCTAT CCTTATTTCG TAACCTTACT GTAATCATGA GAGTATTGGA AAAACCCAAA 002000 002001 TTGAGGGACA GCATCCAGGA CATGAAAGAT GAAGATAAGA ACTCTATAAG ATTGGAGGAA GATTAAGAAG AAATAGTACC 002080 002081 TAAATATAAT GTGGGGTCCT GGATAGGATT CTAGAACAGA TAAACAGCAT CAGTGGGAAA ATTGGTGGAT TTCTAATTAA 002160 002161 GTTTGTAGAT TAGTTAATGT TATTGTATCA GTGTTAATTT CCTGTGGATA ATTGTATCTG CTTAATGTAG AAGTGAGTAA 002240 002241 GACATATGGG ATAAGGGAAA TTGTACCATT TTTGTAGCTT TTCTTTGTCT AAAATTAGTT TCTAAAAGTT TAAAAAGACC 002320 002321 TCTGGGAAAC CATTTAACTT CTTGTGCCTC AGATTCTCTC ATCTGATTAA GTCAAGACAG CTTGTTTGGA TGATCTTTAG 002400 002401 GATCTTTTTT TGGGTGAAAA CATTCTGTAA TTTTTGTATG GGAGTTTTAA AATTGAAATT ATAACCTTAC CTCCTTTTTT 002480 002481 CTCTGTTTGG GTGTAGGAGG AAAAGGCTTC TCTTTTACAT CGTACTCAGG AAGAAAGAAG AAAGAGAGTA TAAAATAGAT 002560 002561 TTGTGTAGCC TTTGATTTTA AAAAATTCGT TAATAGGCTG GGAGCAGTGG CTCATACCTG TAATCTCAGC ACTTGGGAAG 002640 002641 GCTGAGGCAG CTGGATCATT TGAAATCATA AGACACCTAG TTTTATTTCA ACATATGCTT GATTTTTCCA CCAAAAAGTA 002720 002721 GTACAGTGAA GCAGCTTAAT TATGTCTTGT GTTGTTAATC ATTGTGATTT AGATAAACAG CGGTGCGCCT CGAAGCGCAG 002800 002801 TGCTTCTTTT CTGTGCACGC GCGTGTGTAT GTGTGTGTGT AGTGTTTGTT GGTTTTGTCT TTATTTTTGT TTTTGTTTTC 002880 002881 TGAAACAAGG TCTCACTTTG TCACCCAGGC TGGAGTGCCG TGGCGTGATC TCAGCTCACT GAAACCCCGC CTCCCAGGCT 002960 002961 CAGGTGATCC TCCTACCTCA GCACCCTTGA GTAGCTGGGA CGATAGGCGT GCCACCACAC CTGGCTAATT TTTTGTAATT 003040 003041 TTTGTAGAAA CGGGGTTTTG CCATGTTGCC TAGGCTGGTC TCGAACACCT GGGCCCAAGT AATCTGCTTG TCTCAGCCCT 003120 003121 CAGCCTCCCA GAGTGCTGGG ATTGCAGGTG CAAGTCACTG CGCCCAGCCC CTCGTGTGTT TTCTAACCAT TTCTTTGCCA 003200 003201 TGTGTTTTCT AAGAACTGTG GTGTATGTGG TGGGGATGAA TGCTCTTTAG CTCTGAGAGA TTTATAGCTT CATATCTTAT 003280 003281 ACTTTAATAA TTTGGGATAA AATGATTACA CAGATGACTT CAAAGCAGAA AAATACAGAT TTGTTTTTCA TTGTATGTGT 003360 003361 AGAATTAAAT ATATATACCG TCCATGTGTT TGTAAACAAG TTTTTATAAT ATTTTGGAAA AAATATTGAG GATGTGCCTG 003440 003441 GAGAGAGAAG TAAATTTTGT CTATAATTTC ATAGCTGCTT TTATTATCAG TGATATTTTC ATTATAATCA ATAGAATTAA 003520 003521 TAAGCTATTG ATTCATGTTA AAAATTGCAT TCTCTTTCAT GAAGTTCAAA TAACATTGAT GAGCTTTTAA ACATTTCAGC 003600 003601 ACATAGTGAT CTTAAAATTA AATGTATTTT GAAATCCTAT CTAGATTATA AACTAATTTC CACTAGCTGT TGTTAGACAC 003680 003681 ATCAAATAAA TAAAATAGAC TTGCCTTCGT CAGCTTCAGC AATATCATTC ATAGTTCTGA ATCTTCTAAG AATTCTTAGA 003760 003761 ACATTTGTGA ATGATAATTG TTTCCCGGGA AATATGAGTA CACTTGGAAG AAGCATATTC CACCAAAGTG ATTCTAAATC 003840 003841 CCTACCACGT TTTTAAAGTT TTCTTTTAAG CTTGTTAAGA AATAGTAAGA GAAGGGGCTT CCTTTTCGAT CCGCCATCTG 003920 003921 CGGTGGAGCC GCCACCAAAA TGCAGATTTC CATAAAAACC CTTACGGGGA AGACCATCAC CCTCAAGGTT GAACCCTTGG 004000 004001 ATATGATAGA AAATGTAAAG GCCAAGATCC AGGATAAGGA AGGAATTCC |
Predicted Small Protein
Name | NONHSAT124461_smProtein_2741:2941 |
Length | 67 |
Molecular weight | 7508.9952 |
Aromaticity | 0.106060606061 |
Instability index | 64.2515151515 |
Isoelectric point | 8.67303466797 |
Runs | 12 |
Runs residual | 0.0312103066594 |
Runs probability | 0.0712403580051 |
Amino acid sequence | MSCVVNHCDLDKQRCASKRSASFLCTRVCMCVCSVCWFCLYFCFCFLKQGLTLSPRLECR GVISAH |
Secondary structure | LEEEEELLLLLHHHHHLLLLLLEELLEEEEEEEEEHHHHHHHHHHHHLLLLLLLLLEEEE EEEELL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLL LLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTooooooooooooo oooooo |