NONHSAT124678
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT124678 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2255 nt |
Genomic location |
chr8-:1706374..1708613 |
Exon number |
1 |
Exons |
1706374..1708613 |
Genome context |
|
Sequence |
000001 GGAAGACTGA ATGAAACCCG GGCGGATTCC CAGCTTGCTC CGTCTCAGCT TGGGCACTGC TGTTTACAGC CTGTGTACTC 000080
000081 CCCTCCCGCC CTGCCACCCA CAAGTGTCTC ACCTCCTTCC TCGACAGATC GAATGACACA ACAAACATTT ATCTTGGGTG 000160 000161 CACAGCGTGT CAGGCGTCAG GCTAAGCACT TTGATAAACT GGTTCTTTCA AACATCACAG GTGTCTGACG CAGGCACCAT 000240 000241 TATCCACGTC ATAGAAAAAA AACAGTGTTC AGTGAGCCTG AGGTTAGCAA TGTGTGCACC TCCACACACT GCTAAATGAC 000320 000321 AAAGCTGAAT TTTGAAGTAG GATGCCATGA GGTGTCTGGA GTAGACAACC AAAATGACTT AATTGAGGTG TCAGGGGACT 000400 000401 GTCTTACTTT CTGGTCACAT AAGCAATATA CGCTCATTGT GAGGTTTGGT TGTTCCATTA CAAAAAAGAC TGTTTTAAAA 000480 000481 GCCATTAGCG GAGGGATGGG AGGAGTTCTC TTCTGCCTGT GTCTTCCTCC TAAACAGCAA AATGACGGTG TCCTCAAAGG 000560 000561 GATGTATAAC GAGCGAGAGG CGAAAAAGAA CGTCTGTGAT TTTAAATCCA GTGTCCTTCA CCAGTGAGCA ATAGTAGTTC 000640 000641 TGTGAGTGGG AGAGCGGGAC CGTGGTGCTT GCAAACAACA CTTTAAAACA CTGGAACCCA AGTTCAGGAT CTGCTGACAG 000720 000721 CACATCTGCA GGAAGCATGA GGGTCTCTGG ACTCCCGCAG ATCAGCTGCT CAGCTTCTCA GCCTCAATGT GGCAAAGACT 000800 000801 CTACCTGACC TAACTCCAGG CAGGGTCCTC GAAGCCCTCA AGGCTCTGAC CTGGACCCCT GTCCCCTTTC GTCCAAAAGA 000880 000881 ATCCTGCTGG GTCAATGCAG TGACAGTTCC CCGCCCCTGA TATCATACTC CTCATCCCTC ACCCTCGGTA TCTTATCACC 000960 000961 TGGCCTGCCT GTGGCACGAA TCCTACCAAG TGGTTCTAGC AAGAACCCCC CTGGCCTGAT GTCGCCTCTT CATAGTTTTC 001040 001041 CGTCCGTCCT CACCCTCTCC GTGGCTGTAC ATTCCCGTTT TTCTTCTTAC ACTCAGAGTT GAGCCTAGTC CCACTGCAGT 001120 001121 GGCCCCTGCA CCTATCGCGA TTCCTTTGAG ACTGTAAAAC AAAAATAAAA TTCTAGTCCC CCGCCAACCC CGTTAGCCAC 001200 001201 GAGCTTTCCA AAGTAAACCT TAGAGACTAG TTCAGACCGT GATGGGAAGT GGGGGTGGGA CAGGCTCCTT ATACCCGCCT 001280 001281 TCCGTTGAAA TCCAGGCACA GCTGACCTGC ATTAACGTCA AAGCAGAGAT CTTAAGGTTG ACAAAACAGA CTCTGTAGCA 001360 001361 ATAAGATACT ACATTCCAAC CTGACTCTAG TATAGCATCA CATGATAGAG AGCAGGCCCT GGAAGAAATC AAGCATTTTA 001440 001441 CCCCAGAATA TATTTCTTTG ACATATTTTG AAGGGGCCCC ACACGGCTGT CTCTTGAGGG GAAAATCCAC ATCCTGCCAG 001520 001521 AATCCCCTTC CCTTTCCAGG TCTTTTCCCT GATCTAGGAG AGATTTAACT AAGAGTCTGG CACCTCTTTT AGGTCCAATA 001600 001601 AGAGCTCTGA AGATAAAAAA CCTTGGTCTC CACAACCTTT ATCGTAACCC AGACAATCCT TTCTATTCAT TCCAGGTCTC 001680 001681 TACAATAATA ACTTAACTCT TTCAATTAAT TGCCCATCAG AAAATCGTTG AATCCATCTG TGACCTGGAC ACCTTCCACC 001760 001761 TGCATCCATG GAGTTGTGTC ACCTTTCTGG ACCAAACCAC TGGACACCTT ACATGTATCG ATTGGCAACA TGTACACCTC 001840 001841 CACACACTGC TAAATGACAA AGCCGAATTT TGAAATACGA TACTGTGAGG TGTTTGGAGA AGAGAACTGA AATGACGTCA 001920 001921 TGGAGGTGGC AGGGGATCAT CTTGCCCTTT TCTTATTTTC TGCCTGTAAC TTCTGTCCCC CTAAAATGCA TAAAATCCAG 002000 002001 CTAGAACCCA ACCACCTTAT GCAGCAGTTC TTAGGACCTC ATGGGGCTGT GTCATCAATC AAAGTCCTCA TATTTGGCTC 002080 002081 AGAATAAATC TCATCAACTA ATTTACAAAT TTGACATGTG TTGACAAGTC TGTCTTACCG TTCTTTAATA AGGGCCGTGT 002160 002161 ATAATGTTTT CTTTAGCAAG TGTGGCAAAA TTAAACCTTA GAAATAAAGA GAAAAAGAAC TCATTATAGA AAACTGTAAA 002240 002241 AAAAAAAAAA AAAAA |
Predicted Small Protein
Name | NONHSAT124678_smProtein_1919:2086 |
Length | 56 |
Molecular weight | 6080.1102 |
Aromaticity | 0.0909090909091 |
Instability index | 45.9309090909 |
Isoelectric point | 6.38104248047 |
Runs | 9 |
Runs residual | 0.0121212121212 |
Runs probability | 0.0475671750181 |
Amino acid sequence | MEVAGDHLALFLFSACNFCPPKMHKIQLEPNHLMQQFLGPHGAVSSIKVLIFGSE |
Secondary structure | LLLLHHHHHHHHHHHHLLLLLLLLEEELLLLHHHHHHLLLLLLLLLEEEEEELLL |
PRMN | - |
PiMo | - |