NONHSAT124864

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT124864

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1604 nt

Genomic location

chr8-:8097136..8099484

Exon number

2

Exons

8097136..8098066,8098812..8099484

Genome context

Sequence
000001 CTTTCCACGG AAAGAGAATA GGTGGGTATT CTCTCTGAAG ACAAATGGTG GAGAGTAGAC TCTCATCAAA GACCCTCTGG 000080
000081 CAGTAATAAG TTGCATTCCA GAAGGTTCCA GAAGGTTCTG TGGAAGGCTG CAGTTTGGGA TTGGTTCTCA GATGTCTGTC 000160
000161 TAACTGCTTT CTAAGGATGA GGACTCCTGG TTTGTGCTTT AGCTACACCC ACAGGAGCAA CAGACTAAGA CATTCCTCCA 000240
000241 CACAATAACA GAACCAGGGA GTGCAGACCA TGTGGGTCTT ACCTGGCCTG TTGTCCACCG TCTGGTTTTA TCTTAGACCG 000320
000321 AGCCTGCTGC AATCCATGTT GTGTATTGGC ACTCCACTTA AGTTTCCTGT TTGTAAAAAG CCCCTTTCAT TCGGTGATTC 000400
000401 CTCAGGGCTT TAGGGGAACT TTCTGGAAAC CAGGCAGAAG GAAATAATGG TGGTTTTGCT GAGGATGGGT GACGTTGGGC 000480
000481 ACGGGACCCA AATGAGTGGT TTGAGCAGAA AGTAGCCTCC ACGCTGGACT AATGCAATAG TCCTGCCATG ATTTCATTGC 000560
000561 AGGGCTGTGA CCGTCTACGA CAAGCTGGCA TCTTTCTTTA AAGAGGCACC TCTGGACCTG CAGCACCGGC TCCTCATGAA 000640
000641 GGTGGGCAGC ACGCACTCTC TGTTCAGGGC CTGAACCTGA GGACCCAGCC ATGGAGCGGT CAGCCTTCAT GGAGCAGGAT 000720
000721 GCTGGGAGCG GGCTGGTGAT GCGTCTCCAT GAGCGGCCAG CCCTGCTGGT CAGCAGCACA CCTGGACAGG TCTGCACGAC 000800
000801 CCCTGGGGCA CTTGGGGCTG GTGTGACGGG CACCTGGCCA ACCTGTGTTC TCCTTACCCC TACCAGTCCT GGATGCCCCC 000880
000881 ACCCCGCCAC GGTCTCAATG AGAAGGGGAG GGTGTGTGAG CTGGAAGAGT GCTGTCTAGA AACAGGCCCC TGACATTCAA 000960
000961 TTCTCTTCTC ATAGAGGACG AAGACTTCTC TATCCTGCTG GCAGCTTTAG AAAGTAGGTG TGTGGCTGCG GTGAGGAGCT 001040
001041 CTGGGCTTGT CCGGGCCACT GAGCTGTGAG CTGCTTGCCT GGCCTGCAAC ATGTTCCTGT CCTGGGCTAC TGGGTGGGGC 001120
001121 AGCCTGGGGA CAGTAGGGGT GGTGGAGGTG GGCCTCCCTG AATCCCCATT TGGGTCATTG AGTGACCAGG CCCTTAGGCT 001200
001201 GAAATGCGCC CTCCAGGAGA GTATCTCACA GAGGCTGGGG GCCTCCCTGC CAGAGCAGTG CACTTTCTCC ACCTGACCAG 001280
001281 GGGACTCTGG CTATTGTTTA TTTAAAAATT TTTTTCTGAA TGGGCATGGT GGCTCACACC TGTAATCCTA GAACTCTGGG 001360
001361 AGGCCGAGGC AGGCAGATCA CCTGAGGTCC GGAGTTCGAG ACCAACCTGG CCAACAGGGC GAAAAGTGTC TCTACTAAAA 001440
001441 ATACAAAACT TAGCTAGGTA TGGTGGTGGG CACCTGTAAT CCCAGCTACT TGGGAGGCTG ACGCACTAGA ATTACTTCAA 001520
001521 CCTGGGAGGC AGAGGTTGCA GTGAGCTGAG ATCACGCCAT TGCATTCCAG CCTGGGTGAC AGAGCGAGAG TCTGTCAGGA 001600
001601 AAAA
[back to top]

Predicted Small Protein

Name NONHSAT124864_smProtein_269:412
Length 48
Molecular weight 5228.3061
Aromaticity 0.127659574468
Instability index 58.7682978723
Isoelectric point 9.30230712891
Runs 7
Runs residual 0.0173404255319
Runs probability 0.0327554445201
Amino acid sequence MWVLPGLLSTVWFYLRPSLLQSMLCIGTPLKFPVCKKPLSFGDSSGL
Secondary structure LEELLLHHHHHHHHHLHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLL
PRMN -
PiMo -