NONHSAT124979
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT124979 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3787 nt |
Genomic location |
chr8-:9907995..9911764 |
Exon number |
1 |
Exons |
9907995..9911764 |
Genome context |
|
Sequence |
000001 GGACGAAGTT CTCGGACAGA GAACAAGTGC GCTCCTGTCG TACGAAGTAC GTGAAGCTGC AGAGGCCAAA AAACACGCCG 000080
000081 AGCCCTTGGG GATGCGGTTT GATTTTAAAG TTGCTGCCGT GTCGCCCCGA CTTCGCAGTT TAGCAGTACC CAGTAAGATA 000160 000161 GAAGAGGACC TGCCTTGCAG CCAGCTAGAC TGTCAGCTTT TATTGGAGAC ATTGTCATGA CGGCCATCAG AAGGGTTGCT 000240 000241 ATTCGTCCAA AGTGAAAACT AAGCACAGTT CTCAAAATGC GCGGAATAGG GAAGATGAAT TCAATATTAA GTTATGTATT 000320 000321 TACAAACATA TTTAAGCCCA TTTTGCAGCG GCCAAAATAC GGGAGCAAGG CACCAACAGC ACCATTAAGG CAGTGTAGGT 000400 000401 GGACTTAATG GTGGTGTTGT ATTATTCTTG TTTCTCAAAT CATAGGAGAT GACATTTGTT CCTGTGACAT TCTCAAACTA 000480 000481 AATGTAAAGT GGTTGGAGCG AGGTGAGTGA CTTGGGAGTT CATCTGTGTG AGATTTTGGC TTAACACATG TTCTGCCAAA 000560 000561 ATGGGCAGGT CGTCTCAGAT GAGGGAGGGA ACTTCAGATT AGCACCCACA GAAAGGAGGC TTTCACCCAG CTTCTTGCAT 000640 000641 GGATTTAGTT ACCACTTTGT TTTCATGTGG TCTGGACTGT AAGGAGGGCA GGAGGCTTAG CAGTGCTATA GTGTAGAATG 000720 000721 AGGTGTGTTG CCAGGCATAC AACACTAAAA AGGCTCTAGC TTTGATTTTG TAATTTGTAT TTCCCCTGGA CAAAATGATA 000800 000801 CCTAAACTGT TTGTTATTGC TATGAGGCTA TACCAAGTCG GTTCCACAGG CCTTTCATGA AAACACCCCC AGGAGTCCCT 000880 000881 TCTAGGCTTG CGAAGGCCTG GTCACTATTA AGGGTCTGAA AAAATAGTCA TTCTGTCAAA GACAATATTT TGTGTTTTTC 000960 000961 AGTTACTTCT TTTTGATACA TACTGATTTG TCTGTGTTTT GTGGTTGATT GTATGAAGTT TCACATGCTA GAAATACTCT 001040 001041 GCAACTAAGA GCTGAAGAAT GTTTAGTGTG AAGAAATAAC TTACTTGGCA TGATGGCTCA CTCCTGTAAT CCCAACACTT 001120 001121 TGAGAGGCTG AGGCAGGAGG ATTGCTGGAG GCCAGGAGTT TGAGACGCCA TCTTTACCAA AAAAAAAAAA AAAAAAAAGG 001200 001201 TATTTAAGTA GTTGGGCATG GTGGTGTGGT AGCGCACACC TGTGGTCCCA ACTACTTGGG AGGCTGCACC AGGAGGAACG 001280 001281 CTGGAGCCAG AGAGGTAGAG GCTGCAGTGA GCTATGATCA CACTGCTGTG CTCCAGCCCG GGCAACAGAG CAAGACCTTG 001360 001361 TCTCAAAAAA AAAAAATTAA TTTTGATGTT AAATGAAAAA GTAAAACAAA TGCAGTGTGC GTGTATACAT GTAGTATATA 001440 001441 TGAAAATGCA TGTACTCCCA GTTGCACAGC CACTGAACAA TTCGAAAAAA ATGCAATTTT TTTTGTTCAG AATAGTGGGA 001520 001521 TTCTACTGCT TTTCATTGTC TTTAAACTGT TTTAAGTGTT CTGTATTGTT ACAACGTTCT CGAGTATTCC AATGGCTGTT 001600 001601 ACTTTTATAA TTATAAAAGA ATAAGCATTT TTAAAGAACA GATATATCTT ATTTCAAAAA CAAGGGTTTT TCGTTTACCA 001680 001681 GAATAGCTGC AAGAAAAGTT ATATTAGTTT CTTTGGTGTT TTGAGGAAAG AATTGAACAT TTTTGCCTTC AGTGGTGCCT 001760 001761 TTTTCACCAC TAGGACTTCC TTTTCTTCAG ACATTCCCCC TAATCCAGCG GTCCCCCACC TTTTTGGCAC CGTGGACGAG 001840 001841 TTTCGTGGAA GACAGTTTTT TTCCACAGAT GGGGAAGGGG AGATGGGGGA TGGTTTCGGG GTGAAACTGT TCCACCTCAG 001920 001921 ATCATCAGGC ATTAGTTAGC TTCTCATGAG GTGTGTGCAG CCTAGATCCC TCACATGCAC AGTTCACGAT AGGGTTTGTC 002000 002001 CTCTGATGAG AATCTAATGT CGCTGTTGAT CTGACAGCCA CATCTAACTT GGGAAGGTGG GAGATGAGGT TCTCTTGCGG 002080 002081 AGTGACTATA GATACAACTA ATACTTGGAT ATTTGGCAGT TCTAATAATA AAACAGGAAT GTTCTTTGGA CAACTGTGAC 002160 002161 ACAATCTACT CCTCTGGCCC CTCAAATATC CATGGATACC CTTGTGACAC ATAGAACACA CCCTGTTTGA AGAGAGAAAA 002240 002241 CCCAGCATTC TAAGCAGTTA CTGCATCCAG CTCAGCGTCC ATGATCTAAA GATGTAACAG TCCCTTACAA GTCTGATATA 002320 002321 ACTCCTCATG GTCCAATGAC CTACAGAGTA AATTATGTTA TTTATTCCCC TTTCTCTTCC CCACACAGCC AGTATGCAGT 002400 002401 GGTGAAGTAG GGCACGAAAA CTAATTTGGA AGAAGAGTGA GGACAAAATA GTAGTTCTTT GTCTAAGCGA ATGTGAAGAG 002480 002481 CAGATTAGAC TACAAAGGTA ATGAAGTAAA TTCTTGGTTA GACCCCAGTT CTGTTTTCCA GGAGGAACTC TGGTTTGTTG 002560 002561 CATCCAAAGG TACTGTCTTT ACCCATTGGG AGGTTCTTAC CCATGATCTA TGATTCCATC TGAAGGGCAT GCTAAAGAGT 002640 002641 GTGCTCCATG AGAGGCTACA CATCTTTTTA TATCCAGTTT CTTACTGGTG CGCTTTTGAG GGACTGTGGG TTACTTTAGT 002720 002721 AGGGTCAGAT AGACACAGGC ATTGGCAAGC TAGGCTTAAT AGCTTCTTTG TCAATTCAAT TTTTAAAAGA TACCGAATGG 002800 002801 ATTTCTTATC TGTTTGTTCC TTGTATAGTT CCTTTTACAA ATAACCACAG ATAGAGATCT CAATTAGTCA TATTTCTTAT 002880 002881 GCCTAACTAC TCTTCATTTT TATTTACGAG ACTCTCTCAT ATCTCCTGTA CCTACTAACT TAGTGGCTAT ATGCTTGCAC 002960 002961 CCAGCAAAAA CAGCAGTCAT GGTTAGGAAG GCAGTGCCCT TAATATGACC TCTATTGCTT GTCTGGGTTC CACTGTCCAG 003040 003041 CAGAGAACAC TTTGCTGATG GCCTTTGAGA AGTGCCTTGG GTCACAGTTT TATCTTACAC TGTCAGAAGT GTAATAGCTT 003120 003121 TTGGCTTTAT CAGAACTAGA AGGCTTGAAA TCACCACTCA GTCAATTTGT ATTGCAGACT ACAGGCAGAG AACTCCATCT 003200 003201 TAGTATGACT TTATTTCCTT CCAGCTCTGT TAACAAAATG ACTAGTTTTT ACCTGAGTTC ATCTTTCTCA AAGTACTTTG 003280 003281 CTAAAGAGAC AGGAAGAAGG CAGTACTGTC TCACTGACCC AGAGATTCAC TCCCAACCAT TTTCCCTGCT ACTACAGATT 003360 003361 CAAAGAGCAG GTAGTCTGCC TGCTAAGGTA CTGAGTTGAC AATTTTATCA AATGTCTTGT GGCGGGGGAA AAAAAAAAGG 003440 003441 AGGGGCTTGG TCACCAGCTT TTCACCTGTA ATACCTGTGC TGCCTGTCAG TTAATTAATA CCACATAATT TAGGTTAATG 003520 003521 TCATGGTCTC TACAGAAAAT CTGGAGCTAA TACTGGTTTA GCAACATTGC AGCTACAAAA TCTATATGCA AAAATCGTAT 003600 003601 TTCTATAAGA CAAAATAATG GAAATCAAAA TTTTAAAAAT ACTACTTATT TATTAACATC AAAAATATTT AAAATTTGTA 003680 003681 TCTGACTGAA GATATGTTAG ACCTGCACAT CAAAACCGCA AAACATTGCT AAGAGAAATG TAAAAGACCT AAATAAATGT 003760 003761 GGAGCTATAC CAAAAAAAAA AAAAAAA |
Predicted Small Protein
Name | NONHSAT124979_smProtein_1313:1609 |
Length | 99 |
Molecular weight | 11471.0965 |
Aromaticity | 0.102040816327 |
Instability index | 55.701122449 |
Isoelectric point | 10.071105957 |
Runs | 14 |
Runs residual | 0.00381460995613 |
Runs probability | 0.059403941757 |
Amino acid sequence | MITLLCSSPGNRARPCLKKKKLILMLNEKVKQMQCACIHVVYMKMHVLPVAQPLNNSKKM QFFLFRIVGFYCFSLSLNCFKCSVLLQRSRVFQWLLLL |
Secondary structure | LEEEEELLLLLLLLHHHHHLLHHHHHHHHHHHHHHEEEEEEEEEEEELLLLLLLLLLHHH HHHHHHHHHHEEEELLLLLEEEEEHHHHHHHHHHHHHL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo ooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiii |