NONHSAT125068
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT125068 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1928 nt |
Genomic location |
chr8+:11433822..11438851 |
Exon number |
3 |
Exons |
11433822..11434826,11435879..11436150,11437979..11438851 |
Genome context |
|
Sequence |
000001 GGAGTTTCTC TGGCACACTC TTTGAGGAAA TAGAATTCGC CAAACCAATG CAAATGGAGA AATATATTTC ACCTGAGTAG 000080
000081 GGAAGAAAAA CCTTGTAAAG GCTTCCAAGA ACCTCCAGAA ACCTACTGGA TGAGCTTACC ACTAATCTCT TTTAAAGCAA 000160 000161 TTCCCTGACA ACACTCTGTT AATCTCTCCT GAGCTCCTTA GTACCCCCTG AAAGTAGCAG GACAGCCTTA CTTTCCAAAT 000240 000241 CTTCACCTTT GCAAGAGTCT AGTCTGTGAG TCCAGGCTCA CCTGAAGTCT GAGATTTTGG GAGCTTTGGA GAATTCTGGA 000320 000321 TAAAATCCCT TACTGGACTT AGCAGGAATC TCCGATCTGT GGAGAAGTCT CCTCAGAGAC TGAGCATCTG TTCCTAGCTC 000400 000401 CCTCCGGGCT CTGATGCCAT TAATGACTGC AGGAAGCTGT TCCAGGCCTC AATACAGAAA GAACCCTTAG ACCCTCAGAG 000480 000481 CTGGAGGTGT GCAGACTGGT CTCTGCCTGG GCTCAACCTC TGTGATTTCT GGCAAGTTAC TGAAATTCTC TGTGCCTCAG 000560 000561 GTTTCTTTTA TGAAAATTAT AACAGTTTTA TCTCCTAGGG TTATGGTGAA TACCTAGGGC AGGACCGGGC ACTTAGAAAG 000640 000641 CTCTCATCCA ATGTCCCCTA ACTCTTGGAG ACAATAATCA AGACTTAGAG GAACTGACTG GGGGAAACGT CAACACTTTC 000720 000721 TTGGTTCTCT CAGAGGCCGG TGGAGACGCT GCTCCATTCT GCCTGGATCA TTTCCCAGGG CAGTATGAGA CAGGCCTTCA 000800 000801 TCAGAAAGGC CGGGCCTGTG GATGGAGGCA GGGGGCTGAT GGAAATGACC TCTGTGCAGC TAAGGATGCT ATGCTTTGTT 000880 000881 TCTTGAGCTG AACTGCAATT GTGCCCAGCC TTCCTGGGAC AAGGGTGGGA ACTCAGGAGT TACTACAACC ACCGCCACCC 000960 000961 CACCCTGGGA AGGCCATTTG TGGTCTTGGA CAAGTTCCCT CCCACGTGGC TGGACGAGCC CTCAGGCGAC AGCTGCGTTC 001040 001041 TGTCGAGGAA GCCACGCGTA GGTAGGTGAT TCCCCTACTT AATCTGGATC AGACTCACCC TGGACTAATG CCCATGCTCC 001120 001121 TGCCTCCAGG CCCATAGAAG GAGGAGGCAA CCCATCTGGA TGTGTGGAGG AGGTTTTGAT CTCCTCTTCT TGGTCAGAAC 001200 001201 TGCTCATAAG AATCTCCACT GCAGGATCGA TATTTGCTGC CATTTCTTTT CCTCTGCACA CACATTCTAG AGTAAGCAGC 001280 001281 AAACAGAGGT GACCAGAGAT GCTAGGATGG CAACATGAGG GGTCTGGAAA GTCTCCCACT GAGCGATCAG AAGCTGGGTT 001360 001361 TCACATACTC ACCACGGCTA GTCTAGCGAG TTTGCAGAAT TCAGAAACGG GATGAGACCC TGAGGTTTGC CTTTCATTAG 001440 001441 CCTGGCTGTC CACTTATGGG ACAGTCTCTG CAGGAAGGAA GGAAACAGGG GAGGCTCCTA CCTGCCCCAT CAGCTCACTT 001520 001521 TTTAAAACAT GCTCACCTGG CCTCACCAAG TGAGGTGGGA GGAGAGCCCG AGATCGGTTC ACTTTGTGCT TCACATGTCC 001600 001601 TTCACATGTC ACCTCTCTAC TCCGTGAACT TGCAAGTCTC ACCTGGGTCT CTCACTTTCC ATTCCCTGTC TCTCAGATCT 001680 001681 ACTAGCACAA GGCTACAGCC ACAAAGCACT TATATAGTTG GGCCCCTTTG CTGACACGTG ACATGCAATT CAGGGATGCC 001760 001761 TCCTCCTCCC CCTAGAAGTG ATGAGTGCCT GCAGCTATTG TAAATGTTAA AGTAAAATTA ATGTTGGTTG TACACCCATG 001840 001841 TTCATAGCAG CATGACTCAC AATAGCCAAA TGTAGAAGCA ATCTGTATTA GTCCGTTCTC AAGCTGCTAA TAAAGACATA 001920 001921 TCTGAGAC |
Predicted Small Protein
Name | NONHSAT125068_smProtein_1298:1414 |
Length | 39 |
Molecular weight | 4016.3214 |
Aromaticity | 0.0526315789474 |
Instability index | 72.0578947368 |
Isoelectric point | 5.38604736328 |
Runs | 6 |
Runs residual | 0.014716066482 |
Runs probability | 0.0366984631691 |
Amino acid sequence | MLGWQHEGSGKSPTERSEAGFHILTTASLASLQNSETG |
Secondary structure | LLLLEELLLLLLLLLLLLLLEEEHHHHHHHHHHLLLLL |
PRMN | - |
PiMo | - |