NONHSAT125115
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT125115 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1914 nt |
Genomic location |
chr8+:11973291..12424354 |
Exon number |
6 |
Exons |
11973291..11973834,12003148..12003209,12276651..12276793,12277210..12277325,12388452..12388540,12423395..12424354 |
Genome context |
|
Sequence |
000001 ATGCGCGGTC TGCCTCCCGC GGCGGGCCGG GTCTCCAGGG AGGACCTGAG TTTTCTTCAC CCATTGTCAG GGAGGCGCCA 000080
000081 TCGCCCTGGC TTTGGGGCTG GGGCCTCCGG GGAGGTTCCG GTAGGGGCGT TGGAGAGGCC GCTCTTTTTG CAAGGCCCGA 000160 000161 GACGGCGGGC CTTGCGCAGG CCGCCCTATT CCGCGCCCTC AGGGCGTCAG TATCAGCCTG AGGCTGGATA CCCCCGCTGG 000240 000241 GCCCAGATGC CCCCGCTGGG CCCGGAGCAT CCTCCGGCGC TGCCCTCCCA GAGCCACGCA GAGGCTGAGG TGGCGCGGGG 000320 000321 GCGGCCCTGG CTCCGCGAGA AGCGGCGGCA GCGAGGGCTG GAGGACCCGG GCTGCGGGGC TCCGGGGCGT CTGGCCTGGG 000400 000401 TGGGACTGAG CCCATCCAGG GACTGGGACT CCGGGGTTCT GGTGTAGGTG GATCCGGGGC AGGCTCAGGA CCAAGTCCCT 000480 000481 CTCCTTCCAC CAAGGAGCGC CCAGAGGCCG GCGGGAGCTC CAGGTTCACC TCCTCCTCCT CCAGCTTGAC TACAACACAA 000560 000561 ATGAATCCAC TCAAATGTTG GCAAGTGGAG CAGAGTCCCA GAACAGGTGC TGCAGCAGCC CGGCTGGAAG CGATGCAGCA 000640 000641 TCCAGGACGA CGGAGGAAGG GGCAGAGAGG GACCTCTGCT TTCCAGGCTG CCTTTTATAC TGCCTCTGGT CACCTGACGT 000720 000721 GGAACGTACC CTAACCTAAT CAGTTACATG AGGCGCTTGG AAACCACCGT CAATTGGACC GCACTGGGAA ACACAGATGA 000800 000801 ACAAAGTCAA CACCGCTTTG TCCTGCAGTG CCTGGCTCCT TTTTCAGCTC GTCTTGCGAC TCCAGAAACT CCTGGAGGGC 000880 000881 AGAGGCATGC CTGCCATCTT CATCATTGCA TTACCACCAC CCAACACTAT CGGGGGACCT GCCCTGATAA TCAGTCTACA 000960 000961 GGTGTATCCA GCAGCTCCAG AGAGACAGCG ACCAGCGAGA AGGGGCCATG ATGATGGAGG TGGTTTTGTC AAAACGAAAA 001040 001041 TGGGGATATG TAGGGAAAAG AAAGAGAGAT CAGACTGTTA CTGTGTCTAC ATAGAAAGGG AAGACATAAG AGACTCCATT 001120 001121 TTGAAAAAGA CCTGTACTTT AAACAATTGC TTTGCTGAGA TGTTGTTAAT CTGTAGCTTT GCCCCAGCCA CTTTGCCCCA 001200 001201 ACCACTTTGA CCCAATCTGG AGCTCATAAA AACATGTGTT GTATGAAATC AAGGTTTAAG GCATGTAGGG CTGTGCAGGA 001280 001281 CGTGCCTTGT TAACCAAATG TTTGCAAGCA GTATACTTGG TAAAAGTCAT CACCATTCTC TCATCTCAAT AAACCAGGGG 001360 001361 CACAATGCAC TGTGGAAAGC CGCAGGGACC TCTGCCCTTG AAAGCTGGGT ATTGTCCAAA GTTCCTCCCC ATGTGATAGT 001440 001441 CTGAAATATG GCCTCGTGGG ATGAGAAAGA CCTGACGGTC CCCCAGCGCG ACACCCATAA AAGATCTGTG CTGAGGTGGA 001520 001521 TTAGTCAAAG AGGAAAGACT TGCAGTTGAG ATAGAGGAAG GCCACTGTCT CCTGACTGCC CCTGGGAACT GAATGTCTCG 001600 001601 GTATAAAACA CGATTGTACA TTTGTTCAGT TCTGAGATGG GAGAAAAACC GCCCTATGGT GGGAGGCGAG ACATGTTTAC 001680 001681 AGCAATGCTG CCTTGTTATC CTTTACTCCA CTGAGATGTC TGGGTGGAGA GAAACATAAA TCTGGCTTAC ATGCACGTCC 001760 001761 AGTCATAGTA CCTTCCCTTG AACTTCATTA TGACATGGAT TCTATTGCTC ACGTTTGTTG CTGACCTTCT CCTTATTATC 001840 001841 ACCCTGCCCT CCTACTACAT TCCTTTTTGC TGAAATAATG AAGATAATAA TCAATAAAAA CTGAGGGAAT TCAG |
Predicted Small Protein
Name | NONHSAT125115_smProtein_560:733 |
Length | 58 |
Molecular weight | 6325.1081 |
Aromaticity | 0.0877192982456 |
Instability index | 46.0949122807 |
Isoelectric point | 11.3648071289 |
Runs | 9 |
Runs residual | 0.00394736842105 |
Runs probability | 0.047527920077 |
Amino acid sequence | MNPLKCWQVEQSPRTGAAAARLEAMQHPGRRRKGQRGTSAFQAAFYTASGHLTWNVP |
Secondary structure | LLLLLEEEELLLLLHHHHHHHHHHHHLLLLLLLLLLLLHHHHHHHHHHLLLEELLLL |
PRMN | - |
PiMo | - |