NONHSAT125139
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT125139 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3091 nt |
Genomic location |
chr8+:12245248..12279968 |
Exon number |
4 |
Exons |
12245248..12245374,12245467..12245528,12276651..12276793,12277210..12279968 |
Genome context |
|
Sequence |
000001 AGGCCATTTT CAATCCAGAG GAAGACCTTC TAAAAGAGGT GATGGATGGG AGAGTGCTGA CATACTATGT GAAGCTACTA 000080
000081 TTTGGAGTTG GACACGAGTG CATGTGACCT TGTGCCACAG CGGGAATCTT GACTACCACA CAAATGAATC CATTCAAATG 000160 000161 TTGGCAAGTG GAGCAGAGTC CCAGGACAGG TGCTGCAGCA GCCCGGCTGG AAGCGATGCA GCATCCAGGA CGACGGAGGA 000240 000241 AGGGGCAGAG AGGGACCTCT GCTTTCCAGG CTGCCTTTTA TACTGCCTCT GGTCACCTGA CGTGGAACGT ACCCTAACCT 000320 000321 AATCAGTTAC ATGAGGCGCT TGGAAACCAC CGTCAATTGG ACCGCACTGG GAAACACAGA TGAACAAAGT CAACACCGCT 000400 000401 TTGTCCTGCA GTGCCTGGCT CCTTTTTCAG CTCGTCTTGC GACTCCAGGT ATTGGAGTCC AGGGAGGGGT ACGTCGCCTT 000480 000481 TACCCTGTGC TTGCCACGAT CTTGTCTCCT TAATCCTCAC TGCAGTTCTC TGCCATAGAG TCTTATACTG CTTTACATGT 000560 000561 GGGAAACTGA GGCTCAGAGA GTTTCACAGC AGGGCAGGGA GCCCAGATGT GAATCTGTAG ATACCAAACT TTCTAATTTT 000640 000641 TCAGTAGTTT CCAAGCATCT TTTATTTTTC TTGTTTCTTC GTTGGTGTCT TTTTTTTTTT TTTTTTTTTT TTGAGACAAA 000720 000721 ATCTCTGTGC CCAGGCTGAG GTGCAGTGGT GTGATCTCAG CTCACTGCAA CCTCGACGTC TCACATTCAA CAATTCTCAT 000800 000801 GCCTCAACCT CCCGAGTGGC TGGGACTACA GGTGCCCACC ACACCCAACT TATTTTTGTA TTTTTAGTAG AAACACGGTT 000880 000881 TTGCCATGTT GGCCAGGCTG GTCTTGAACT CCTGACCTCA GGTGATCCAC CCGCCTTGGC CTCCCAATAT GCTGGAATTA 000960 000961 TTGATATGAG CCATTGGGCC CGGTCATGTC ATTGGTGCCT TAACCAAGCC TCTTTTAATT TTTCAAACGG AAGAGCCCCT 001040 001041 GTCCCTCAGT TACGGCTGCT GAGCCCTTTC AAGGTGAGTC AGTGAGGAGG GAGAAAAGCG GAAGTGGTGT GGGAAGAGGC 001120 001121 GGGGTCTGGG CCAGCTGCTG GTCCTGCTCT CCTCCCTCCT TTGGCCTCTA GGCTCCCAGG AGTGGTTTCG AACCTGCGCC 001200 001201 ATGTGCTCTG GAGGCTGTGG CAAGGCAGGC GCGGCTTGGA ACCCGCACCA TGTGCTCTGG GGGCTGTGGC AAGGCAGGGG 001280 001281 CAGCTTGGAA CCTGCGCCAT GTGCTCTGGG GGCTGTGCCA GGGCAGGGGG AGTCCTCGTG TCCCCTGCGC ACAACACAGA 001360 001361 CAGAAGGCTG GGTCCACCCA GTGGGCGGTC GGGTGCCAGG CCAGTGCTTA CCCCGCCATG TTTGCAGCCC GAGGCCAGCT 001440 001441 GGCTGCAGGT GCAGGACTAG GCGTCAGGGG TCAGGGTGCA CACATCCCTG CAGGTCTCGG GGCTCCTGGG TTGCTTCTGG 001520 001521 AAGGGCACAG ATGGGACCTG ACTGGAGCTG CAGAGGGGTG GAGCTTCTGG GGAAAGGATC CCTCCTAGGG GGAGTGTCTT 001600 001601 GGGCCTGGGG CCACGTGGCA GGGACAGAGA CGGGTCCATG GCAGTGTCTG CTCTTCTCTG TGAAGGCAAA AAGCCTCTGA 001680 001681 GGGAGTATTA CAGCCGCCTC ATCCACCAGA AGCATTTCCA GCAGATCCAG GTCTGCACCC CCTGACTGCA GGGCCAAGGA 001760 001761 CTACCCCCGC TTCTAGGTGA GAGGCCAGCA GGAGGCTCAG GGAGGAGGCG GGGCCTTAAG CAGGGGGAGC AGGGGTGGGC 001840 001841 ATGATGTACT TTTTCTGAAA AGGTGGCTCT GGAGGCCACT TGGGGACAGG ACCTGGGCTC TGGCTGAACT CCCGGGAGGA 001920 001921 GGCTACTTCC TGGTGTGCCA GCCCCTCCCT GCCAGGTCGC CCCAGAGGCC CTTTACCAAG GGGTTTGAGG AGGCCACGTC 002000 002001 CTTTCAGTCT GCCACGCCCT CCATTGCATC CTCTTCCTTC CTCCAGGAGG GCTGGGCCTG GGTTTGGGGC CACTGTTGCC 002080 002081 CAGGTGGGGG AGGGCAGTGG CTTTGGGAGG AACAGGGACG ATGTGTCAAA CAGCATCGCC TCTCCCAGTG AGATGGTTCT 002160 002161 CCTTTGCCTC CGTCTCTTTC CCCATTGATT TCTCCAAGTG GGGAGTCATG GCTTGGTCCT GATACGTCTC TAGAGCTGCA 002240 002241 TCTTCCAGCT TCGAGTGAGC AGAGCAGTTG GAGTCTGAGG GCCTTTTCCT GGCAGGATTC TCCAGCTAGT CTTTGTTTTA 002320 002321 GACAGTCTTG CTCCGTTGCC CAGGCTGGAG TGCACGATCT CAGTTCATGC AACCTCCGCC TCCTGGGTTC AAGCGATTCA 002400 002401 CCCACCTCAG CCTCCCAAGT AGATTACAGG ATTACAGGAG TCCACCACAA CAGCTGGCTT ATTTTTGTAT TTTTAGTAGA 002480 002481 GACAGGGTTT CACCATGTTG TCCAGGCTGG TCTTGAACTC CTGACCTCAA GTGATCCTCT CGCCTTGGCC TCCCTAAGTG 002560 002561 CTGGGATTCC AGGCGTGACC CATCATGCCT GGCCCCAGGT AGTCTTTAGA AATGTTAAGC TATTTGGCTT TATTTTCACA 002640 002641 CTGACAGCTG GTTTGTGGTG GGTGTGTTAT GGTTTATTAT TATTATTATT ATTATCATTA TTATTATTTT GAGACGGAGT 002720 002721 TTCGCTCTTG TAGACCAGGC TGGAGTGCAA TGGCGCGATC TTCGCTCACC GCAACCTCTG CCTTCCCAGG TTCAAGCGAT 002800 002801 TCTCCTGCCT CAGCCGCCTG AGTAGCTGGG ATTACAGGCA CATGCCACGG ATTAGCATCG CTAATTTTGT ATTTATTTTT 002880 002881 AGTAGAGATG GGGATTCACC ATGTTGGCCA GGCTGGTCTT GAACTCCTGA CCTCAGGTGA TCCACCCGCC TTGGCCTCCC 002960 002961 AAAATGCTGG GATTACAGGC GGGAGGTGAA CCTGGGAGGT GGAGGTTGCA GGGAGCTGAG ATTGTGCCAC TGCACTCCAG 003040 003041 CCTGGGTGAC AGAGTGAGAC TCTGTCTCAA AACAAAACAA ACAACAACAA C |
Predicted Small Protein
Name | NONHSAT125139_smProtein_143:316 |
Length | 58 |
Molecular weight | 6359.1243 |
Aromaticity | 0.105263157895 |
Instability index | 48.3264912281 |
Isoelectric point | 11.3648071289 |
Runs | 9 |
Runs residual | 0.00394736842105 |
Runs probability | 0.0297846866474 |
Amino acid sequence | MNPFKCWQVEQSPRTGAAAARLEAMQHPGRRRKGQRGTSAFQAAFYTASGHLTWNVP |
Secondary structure | LLLLEEEEEELLLLHHHHHHHHHHHHLLLLLLLLLLLLHHHHHHHHHHLLLEELLLL |
PRMN | - |
PiMo | - |