NONHSAT125586

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT125586

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1932 nt

Genomic location

chr8-:23571351..23584646

Exon number

4

Exons

23571351..23572760,23575768..23575856,23583975..23584124,23584364..23584646

Genome context

Sequence
000001 ccgccccggc TCCTCTTGCG GTTCCCCCCG GCCTGCGCGG AGCTCCACCA CCCGCCCTGG CGCCGGCGGC CCCGCGTCGT 000080
000081 CAACAGCGCG AGGTGTCGGG TGGCCCAGGG TGTTTGGGCC GCACCGGGAG GCTGTTGGAA TGACAAGGAC GTCCCCGGGG 000160
000161 CCAAACGAAA ACAACCCCAC CCCCTGCGGC GCCACCCGGC TGGGAGCGGA GAGAGACTGA CGGCGGAGGC GGGGGTCAGG 000240
000241 GCGCGGACCC GGACCCCAGC CCCATGGGGG ACAGAGTCCA AAAAAACCGG CCGGGTGGAG GATGCAGCCG GGCGTGGTGG 000320
000321 CTACAAGGAA GTGCCCTGGT GTTAAGAACT CAGCCTCTGA AACCCGCCGC CCAGCTTCGA GTCAGCGACG TACTTTTGTT 000400
000401 GTCCCGgcct tagtatcccc gctgcaataa gagtgtaagc tcctaaaggc agaaaTCaag ctgacctaag caaagacctg 000480
000481 aaggagctat gaggacatct ggcagaagag GTAATGCTAC GGGCAAGAGG CTGGCCAGCG GCTAtaaaca agttaaggga 000560
000561 ctcctctgag cctcaacatc ccatccctgg aatggagaga aggacgtctg ccctgcttat ctcaaaagga catcgatgag 000640
000641 atcaTAGAAG CCCAAGCTGA GGTTACATCT GATGCTAAAA ACTAGACGAG AAAGGGTCTG TCTGACCCTC AAGGTCAGCA 000720
000721 ATGTGTGTGC AACTCCCCTC TCGGGGTCTG GGGACGCAGC CATGTGTTCC ATCGCACACC AGGCTTTGGG GATATTGTAG 000800
000801 GGCTCAGACC GCCGACTGCT AGTTTATTAA AAGAGCAGCT GCCATCCCGC CGCGCAGTGG GACAGAGAGC TGCAGCCCGG 000880
000881 CGCAGGCTCG ACCCCGCAGG GAACCGCGAC CCGGGGATAG GCAGCTCTGG ACTGCACTGA TCTGGGACTC TGTCGGCTCT 000960
000961 acagacacac acacgcgcgc gcacacacac acacatgcac acacgcacgc acacacacac gcacgcacaG CCGCTAGGCC 001040
001041 TAGAGTTTAT TTTTCCAGGG GCTGGTGGGG ACTCCGCTCC CGCGGCGGGC GGCGGCACTG GAATGTTAAT TGAAACGGAG 001120
001121 CTGGCGAGCG CGGCGCAGAT AAGCGTCGCC CAGCAGCGTC CCCGCCTGCG GCTCCCCGAA TCAGCGATCC GGGAAGGCCC 001200
001201 CGCCGCCTCT CTGGCCGCTG AGGGTTTTCT TTTCCACGCT GAAGGAGTGG AACGCGCGCG GAGGCAGCTC GGCGCCCGCA 001280
001281 AACCCCCGGA GTCAGCCCCC GACGGTCTGT CCCAGAACTA AACGGTCTCC GCCACCCAAA GCCGAGAAGC TAAGAGGCCG 001360
001361 GCTGGGGGAG GGTGACACGG AGAAATGGAG AAGCCCACCC AGCGGTTACA TACCGGCAGA TTTTTATTTC CTTTAACTGG 001440
001441 TTGGTTCTTC TAAACATTTA ATGCAAGAAA TCTCTCGGCC CGCTTCACTT TACTCTCCAC CCATGCTCTT CCCCTAACCC 001520
001521 TGAGAATTTT GCACAGATTT TCGGGGTTCG CGCGGAGCGC CTCTGAAAGT GATGGCGGAC AAACCGTCAA AAAGGCCTCA 001600
001601 GCatagcaat ttaggaaaag atcgtatcag atccttaatt cacaccatac actctaatac actcgaaagt aagcaaagaa 001680
001681 attataacaa ataccagaat aaaatatggg tgaattcctt tttaacctca gtgtaggaaa agaaaggtct tctcaccatg 001760
001761 actcaaatca agaagcaagt aaacataaca caaatgatta cattttataa aatgcatggt aagaaatcac tataaaagaa 001840
001841 gtcaaaagac aattgtcaaa caggaagaaa atatttgcaa catatagcac acataaccaa agtaactgat attgagaaaa 001920
001921 cttaaaaaTT GA
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Predicted Small Protein

Name NONHSAT125586_smProtein_1571:1735
Length 55
Molecular weight 6381.1631
Aromaticity 0.0740740740741
Instability index 46.9222222222
Isoelectric point 10.4463500977
Runs 8
Runs residual 0.0145438121048
Runs probability 0.0459282812225
Amino acid sequence MADKPSKRPQHSNLGKDRIRSLIHTIHSNTLESKQRNYNKYQNKIWVNSFLTSV
Secondary structure LLLLLLLLLLLLLLLHHHHHHHHHHLLLLLHHHHHHHHHHHLLEEEEHHHLLLL
PRMN -
PiMo -