NONHSAT125586
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT125586 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1932 nt |
Genomic location |
chr8-:23571351..23584646 |
Exon number |
4 |
Exons |
23571351..23572760,23575768..23575856,23583975..23584124,23584364..23584646 |
Genome context |
|
Sequence |
000001 ccgccccggc TCCTCTTGCG GTTCCCCCCG GCCTGCGCGG AGCTCCACCA CCCGCCCTGG CGCCGGCGGC CCCGCGTCGT 000080
000081 CAACAGCGCG AGGTGTCGGG TGGCCCAGGG TGTTTGGGCC GCACCGGGAG GCTGTTGGAA TGACAAGGAC GTCCCCGGGG 000160 000161 CCAAACGAAA ACAACCCCAC CCCCTGCGGC GCCACCCGGC TGGGAGCGGA GAGAGACTGA CGGCGGAGGC GGGGGTCAGG 000240 000241 GCGCGGACCC GGACCCCAGC CCCATGGGGG ACAGAGTCCA AAAAAACCGG CCGGGTGGAG GATGCAGCCG GGCGTGGTGG 000320 000321 CTACAAGGAA GTGCCCTGGT GTTAAGAACT CAGCCTCTGA AACCCGCCGC CCAGCTTCGA GTCAGCGACG TACTTTTGTT 000400 000401 GTCCCGgcct tagtatcccc gctgcaataa gagtgtaagc tcctaaaggc agaaaTCaag ctgacctaag caaagacctg 000480 000481 aaggagctat gaggacatct ggcagaagag GTAATGCTAC GGGCAAGAGG CTGGCCAGCG GCTAtaaaca agttaaggga 000560 000561 ctcctctgag cctcaacatc ccatccctgg aatggagaga aggacgtctg ccctgcttat ctcaaaagga catcgatgag 000640 000641 atcaTAGAAG CCCAAGCTGA GGTTACATCT GATGCTAAAA ACTAGACGAG AAAGGGTCTG TCTGACCCTC AAGGTCAGCA 000720 000721 ATGTGTGTGC AACTCCCCTC TCGGGGTCTG GGGACGCAGC CATGTGTTCC ATCGCACACC AGGCTTTGGG GATATTGTAG 000800 000801 GGCTCAGACC GCCGACTGCT AGTTTATTAA AAGAGCAGCT GCCATCCCGC CGCGCAGTGG GACAGAGAGC TGCAGCCCGG 000880 000881 CGCAGGCTCG ACCCCGCAGG GAACCGCGAC CCGGGGATAG GCAGCTCTGG ACTGCACTGA TCTGGGACTC TGTCGGCTCT 000960 000961 acagacacac acacgcgcgc gcacacacac acacatgcac acacgcacgc acacacacac gcacgcacaG CCGCTAGGCC 001040 001041 TAGAGTTTAT TTTTCCAGGG GCTGGTGGGG ACTCCGCTCC CGCGGCGGGC GGCGGCACTG GAATGTTAAT TGAAACGGAG 001120 001121 CTGGCGAGCG CGGCGCAGAT AAGCGTCGCC CAGCAGCGTC CCCGCCTGCG GCTCCCCGAA TCAGCGATCC GGGAAGGCCC 001200 001201 CGCCGCCTCT CTGGCCGCTG AGGGTTTTCT TTTCCACGCT GAAGGAGTGG AACGCGCGCG GAGGCAGCTC GGCGCCCGCA 001280 001281 AACCCCCGGA GTCAGCCCCC GACGGTCTGT CCCAGAACTA AACGGTCTCC GCCACCCAAA GCCGAGAAGC TAAGAGGCCG 001360 001361 GCTGGGGGAG GGTGACACGG AGAAATGGAG AAGCCCACCC AGCGGTTACA TACCGGCAGA TTTTTATTTC CTTTAACTGG 001440 001441 TTGGTTCTTC TAAACATTTA ATGCAAGAAA TCTCTCGGCC CGCTTCACTT TACTCTCCAC CCATGCTCTT CCCCTAACCC 001520 001521 TGAGAATTTT GCACAGATTT TCGGGGTTCG CGCGGAGCGC CTCTGAAAGT GATGGCGGAC AAACCGTCAA AAAGGCCTCA 001600 001601 GCatagcaat ttaggaaaag atcgtatcag atccttaatt cacaccatac actctaatac actcgaaagt aagcaaagaa 001680 001681 attataacaa ataccagaat aaaatatggg tgaattcctt tttaacctca gtgtaggaaa agaaaggtct tctcaccatg 001760 001761 actcaaatca agaagcaagt aaacataaca caaatgatta cattttataa aatgcatggt aagaaatcac tataaaagaa 001840 001841 gtcaaaagac aattgtcaaa caggaagaaa atatttgcaa catatagcac acataaccaa agtaactgat attgagaaaa 001920 001921 cttaaaaaTT GA |
Predicted Small Protein
Name | NONHSAT125586_smProtein_1571:1735 |
Length | 55 |
Molecular weight | 6381.1631 |
Aromaticity | 0.0740740740741 |
Instability index | 46.9222222222 |
Isoelectric point | 10.4463500977 |
Runs | 8 |
Runs residual | 0.0145438121048 |
Runs probability | 0.0459282812225 |
Amino acid sequence | MADKPSKRPQHSNLGKDRIRSLIHTIHSNTLESKQRNYNKYQNKIWVNSFLTSV |
Secondary structure | LLLLLLLLLLLLLLLHHHHHHHHHHLLLLLHHHHHHHHHHHLLEEEEHHHLLLL |
PRMN | - |
PiMo | - |