NONHSAT125654
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Contents
[hide]Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT125654 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2960 nt |
Genomic location |
chr8+:26307051..26310010 |
Exon number |
1 |
Exons |
26307051..26310010 |
Genome context |
|
Sequence |
000001 gcgtagggaa gaaggaaagt ggggtggagt gagcgaagag gggacaaggg actgggtgtg gagagaaaac ggagctgagt 000080
000081 ggggaggaga agaaaaggga gagaagctga gaggggTGAG CAGGAGGAGG GAGGGCGGGG CGCCTCCCAG CAGTCGGGCG 000160 000161 CAGGCCTAGG GTCCTCCCCT CCCCCAGAGG CCAACGTCCC TGGGGCGTGA TTAGCAGCTC CTTGGGGAAG AGGACGGAGC 000240 000241 CTGAGCTCCG GGCGCGGAGG TCTGGGCGGG GCGACCCGCG GCGCTGCTCG TGGCCGCGGC GATGGCGCGG GGACCGGGGA 000320 000321 GGTTTGTCCA GGAGGACGCT GGTCACACCG CGTTTCTGAA GCTTTCGATT CCTCTTCGGC TCTGCTCTCT GCAGCCGCCC 000400 000401 TGCCTTCCCT CTGCGCGTCT GAGCCGAGTc cccggcgccc aggggcgggg cggcggggTG GGGACACTCA TGGACCCCCC 000480 000481 AGCGAGGACC TGCTGGGTGC GACTACATGG TCACCCGAAG GACCCTGAGA GAGGGGCAGC TGTAGGGGGT CCTTGAAGAG 000560 000561 GGTCTGACTG CGGGGTTTGT GAGCGTCAGC GCGGGGGAGG CTTGGGCCTG GAAAGATGGG GGAGATCTGG CCGATAGAGA 000640 000641 CGTGAGTGCC CCAGAAAGGG GGGCCGAGGT GGTGGAGGCG GGCGCGCGGC TAGCTGGGGT CCAGGACAGG AGGGGCGGGA 000720 000721 GGCAGCCGGG AAGGCCTCAG GCAGGGCCAG CGAGCAGCAC CTCCTGCAGC CTGCCAAGTG CAGGTACGAG GCCACCCCTG 000800 000801 CCCTCACCTA TGTGTGACGC GTCGAGGTAA CCTTTCTGAG CGTTGACTTG TCCACATATG CCAGTGGGGC AATCTCTGAG 000880 000881 GGTGATGAAC ATGTGTAACA TATGGGAAGC TGTATAGTGG CCTTCCCAGC GTGGCTGCTT CATAAACTTA GTCCCTTTCC 000960 000961 CTCCTGGAGG AAGGAAGTCA ACCCAGAGGC TTCTCACTAA TGGGCACTTT CCTAGCACAG GTAAGCGTCA AATGGAATCA 001040 001041 AACAGAAGAG GCATCTCAGA GTTCAACAGA ACAGGTGCCT GGCCTAGCTG GCCTCCGTTT GGGGGATGAA TAAGAATCCC 001120 001121 CTTACAggcc aggtgcggtg ggtggctcac gcctgtaatc ccaacatttt gggaggccga ggcggaggga tcacgagctc 001200 001201 agaagtttga gaccagccta aacaacatgg tgaaaccccg tctctgctaa acatacaaaa attagcagga ctggtggtgc 001280 001281 acgcctgtaa ttccagctac ttgggaggct gaggcaggag aatcgcttga acccaggagg cggcggttgc agtgagccga 001360 001361 gatcctgcca ctgcactcca gcctgggtga caaagcgaga ctccatctca aaaaaaaaaa aaaaaaaTAC CCTTACAGAT 001440 001441 TGCATCTGCA TTAAGACTTA AGGTCTCAAC TTGTTGATTC TTTGCTAGGG ATTCTTATCA CAATACAAAG AATTTACTGC 001520 001521 CATTGATTGC ATCCGAATGG ACAGACACAC ACAGATGCAC ATTTCATGGG AGTGTTTCTC TCATAAGCAG AGAGAACCCT 001600 001601 TCTCAGCCTG AATTCCTTGA CTTGCAAGTC TGTGTGGGAT TCAGGATTAC AGATTTAATG ACCGAAACAT AATAGGGTCT 001680 001681 GAGAGGCGGG ATCTACAGCA GAGCTGTGGG CAAAACTGCT GGAACCAGGC AGGTCCTACC TCCACGACAC AGCATAGAGG 001760 001761 GTGACGTGTC TGAGGGCACA CAGGCTCTGG TTAGGCTTTG TGGAATTCTG ACCTCAATGA GTCACTGAAT TGTTGAGATT 001840 001841 GCCCTGGTAA GTCAGATCTT GATTCAGTTT CTCCATGGGT AAATTGGGAG CAAATATACT GGCTGTTTAA CTTCCCTTAG 001920 001921 GGTAGGTGTG GTCTTAAAAT AGCTTCTCCA AGTTGAGGCA GTTGGTGGGT GTGACTGTCA TTTCTGTGGG ATGGAGGAGT 002000 002001 TGCAGCCTTC CCGTGAGATC AGTGCCCTGG CATGGCTGAA GTGACATGGA GAGGCCAGGA GGCAGCCTGG CAGGAAGGGT 002080 002081 GGCATCCCCC AAAGGGAGGG AAGAGGGAAG CTGGAGAGGT GTGGCCGACC CTTCCCAGAG AGACTTCATG ACACTGGCAT 002160 002161 TCCCCAGGGG CAGTGTGTGG CTCTGTGAAT GTTCCAGACA TTAGCCAGGG CAGTTGAAGC CGCCCTTTAT GCCATACGTG 002240 002241 GAACTGTGCT TTAGGAAGTG GCTTAGTTGG TGGAATAATC ATTGCTGAAC CACAATGCAA CCACAAATGC CAGCAAGTGT 002320 002321 GCACCTTCTT TCCTGGTGAG TGCAATAGTC AGCCACATCC TTCTGGACCA GCCCGGCCTT GTTTCCTAAC TGGGTGGGCC 002400 002401 CTGCTTTGAT GACAGGTGCA TTCCTAGAGG TACTGTCTTC CTGCAGAGTT TTACGTAATG CAACGCCAAG AACGCTTTGA 002480 002481 TGGTGTGGGC TCTTACTGTC ATTGAAACAT CCCAACGAAC TCTCAGGGCA GCATTGAGTG AGAGCAATGG CTTGGGAGAC 002560 002561 CCTTCGTCAT CTGGTTGGGC TGGTGTGTTT GCTGCCCTTG GAAATTCTCT CAGCATTTCC GCTGTTTGTC TCCTCAGCAA 002640 002641 GCTTATTTAT GTCTTTATAC ATACACTCAG GGGACCTAAA AATAATGTTT CTCATTTCAA TCAATCTTCC TCATCCTCAA 002720 002721 CATCTCGTTC AAGCCACACC TCTATCTTCC GTCCTCCCCG ACAGCTTCAG GATTTTTCTC TGAGCTCATA GCATTCAGAG 002800 002801 TCATTTCACA CACATAATGG TCTTGAGTTG CCTGTCATTT TTAGGTTCTG AGTCtttttt ttttttcttt tttaggcagg 002880 002881 gtgctgttct gttgagcatg ctagagtgca atggtgtaat caatcatagc tagctgcagc ttcaaactcc tgggtccaag 002960 |
Predicted Small Protein
Name | NONHSAT125654_smProtein_2546:2782 |
Length | 79 |
Molecular weight | 8747.4028 |
Aromaticity | 0.102564102564 |
Instability index | 46.1679487179 |
Isoelectric point | 6.36993408203 |
Runs | 13 |
Runs residual | 0.0329893683552 |
Runs probability | 0.0331960920196 |
Amino acid sequence | MAWETLRHLVGLVCLLPLEILSAFPLFVSSASLFMSLYIHSGDLKIMFLISINLPHPQHL VQATPLSSVLPDSFRIFL |
Secondary structure | LHHHHHHHHHHHHHHLHHHHHHHLLHHHHHHHHHHHHHHHLLLLEEEEEEEELLLLLLLL EELLLLLLLLLLLLEEEL |
PRMN | LLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHL LLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTooooTTTTTTTTTTTTTTTTTTi iiiiiiiiiiiiiiiiii |