NONHSAT125756
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT125756 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1793 nt |
Genomic location |
chr8+:28558990..28611207 |
Exon number |
4 |
Exons |
28558990..28559176,28570974..28571067,28573102..28573583,28610178..28611207 |
Genome context |
|
Sequence |
000001 TTTCCGGCGC GGCGCCCTTC GGCAAGTTCC GCAGTCGCCT GTCGGAAATG GCTGCCGGCC GGCAGGGGGA GCGGCGGATC 000080
000081 AGGCGCGGCC TGGAAGGCGG GCGGCCGGCA GCCAGAACGG CTTCTGGGAC GCCGACTTTC GCGCAggcgg cggcggcggc 000160 000161 ggcggcggGT CCCTGAGCTG GAAGCCGGAG AGCAAGCCCT GGAGGTTCAC TCTTTCAAGA AGTCGTGTGC TGAGGTGTAA 000240 000241 TGCTACACAA GTCAGAGGAA GGAAGGGTCC TGAAACACAT GGCCTGATTG TTGGCAAAGG CATCATAAGA AGCTGGCATT 000320 000321 TATTTCTGTT CTAACCTATT ACTGTATAAC TGTGAATAGA CACTATGCAT ATTTGTTGGT CAGCAAAACC AAGAAACAAG 000400 000401 AGCTATGGCA TTTGAAAAAG TCTGTCTGAT TCCAGGGTGT TTTTCCTGGG TTTCATCATC AGGTACCTCC TCCCTTTCAT 000480 000481 CTCAGCAAGA ATGTGGCACC TTTTATCGTT TGATAAAGAT TAAGGACATG TTCTTTGGTC AACAGCCAGA ACTTAAAATC 000560 000561 TGCTGGAATA GGGTCAGAGA CCATTTCAGC TGCAGCTGAG GAAAATGAAA TGTTCATTTT ATTTGGTGCC TTGTCTGGGG 000640 000641 AGCACACTAA CTCTTCTGGA AACGTGTCAG TGAAACAGAG ATCGTTTTGT GGAATAGCAA CCCATGGTTA TGGCGAGTGA 000720 000721 CCCGACGTGA TCTGGGGGGC AGGCTGCAGA GGACTCATGA CAGCCTGTAG CTCCCCTGCT GAGGCAGTGT GGTTATGTTC 000800 000801 CCAGCAGTGG GGGTCAGACG CCCTTCCTCA GAACTTTCTA GTTGCCCTCT ACCTGACTCC TGACTTGTAT TCCTTTTAGC 000880 000881 AGTAGCCTTC TTCCCTCGGG GAGCCAAAGA GTGTGGTGTG TGGCGCTATA TTGTGGCTGC TATTTCATCT GGTTTCTTTT 000960 000961 AATGTGAGGA ACTCACATAC TGACTTCAGT GGGACTCGGT GAGCCGGGGC CGTCTGTGTG GTGGGACCCC CTTTAGCGGG 001040 001041 ACTCAGTGAG CTGGGGCCGT CTGTGTGGTG GAGCCAGGGC CTCTCCCTTT AGTGGAGCCA GGTTGTCGGG CCCCGAATGT 001120 001121 CACTGGTGGA TCTAAGAAGG GCTGAGTGGT CTGACACCAA AACATGCCGC AGGGAGGGCT GTGGTGCCGG TGCTTCCAAC 001200 001201 AAGGACAGCC CTCCTTGACC CTGAAAGGAA CACTGGCTTG AAGGACTGCA GACAGGCTCT GAGGGGCACG CCCTCCTCAG 001280 001281 CGAGAGGCAG CAAGGTGGCC ACAGTGTCAC TGGTCAGGTG CTTCTCACCA CGGGAAAGCC GCCGACCTGT GACTCGCTTG 001360 001361 AGATGGGAAA GCGGCGCCAC AGACCCCGGG TCTCCTTGGC TGTCTGTGGG CCGCCCCTGG CCACCTTGTC CTGGCTCGCA 001440 001441 GGGTGCAGGA GCGCCTCGTT CTCTGGGTGG CCGGCTTGCT GCTCCGGTTT GGGCTGTCTT ACCATAACAC CGTCCCAGGG 001520 001521 CTCTGCAGGC CACTGTGAGC GCTGGCTCCC TGGGCAGTGC TCCTCCGTGT GGACTGTGCC TCAGGCCAGG GCTCACCAGC 001600 001601 TGGGGTCCTG TCCGGAAGGA TGGGATCTTT CTGGGAGCTG CGCCGGACAG AGTGGGGAGC TCCTAGTTTG TGGGGGGAAG 001680 001681 CTTTGATATC CATGCCACGT CCATCCACCC CACCCCTTTT CGTCACGAGC ACAATGGTCT TACATTGGAT TTTTGTAAAA 001760 001761 AAATAAAAAT AAATGGAGAC TTTAACTCAA GCA |
Predicted Small Protein
Name | NONHSAT125756_smProtein_404:598 |
Length | 65 |
Molecular weight | 7346.4275 |
Aromaticity | 0.140625 |
Instability index | 52.53921875 |
Isoelectric point | 8.36090087891 |
Runs | 12 |
Runs residual | 0.03890625 |
Runs probability | 0.040408055114 |
Amino acid sequence | MAFEKVCLIPGCFSWVSSSGTSSLSSQQECGTFYRLIKIKDMFFGQQPELKICWNRVRDH FSCS |
Secondary structure | LLEEEEEELLLLEEEEELLLLLLLLLLLLLLLEEEEEEEELLEELLLLLEEEEHHHHHHH HLLL |
PRMN | - |
PiMo | - |