NONHSAT125829
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT125829 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2335 nt |
Genomic location |
chr8+:29605841..29656007 |
Exon number |
4 |
Exons |
29605841..29606095,29647848..29647963,29648611..29648898,29654351..29656007 |
Genome context |
|
Sequence |
000001 GGGAGATGAC ACAAAACCAA ACCATATCAG TCTTTAAAGA GTTAAGTTAA AATAAGCTCT TTAAAGTGGG CCCTAATCCA 000080
000081 GTATGACTGG TGTTCTTATA AGAAGAGGAG ATTTGGTCAC AGACATGGTT GCATGCAGAA TAAAGACTTT TCGAGGACAC 000160 000161 ACTGAGAAGG CAGCCATCTG CAAAACAAGG AAAGAGTCCT CAGCAGAAAC CAGTCCTGCA GACTCCTTGA TCTTGGACTT 000240 000241 CCAGCCACTG CAATTGATGT CAAGCTTCAG CACCCTTGCA TCTCTGGATA AATGAAATGT CACCCCAGCT GCCGTCCTTG 000320 000321 TTCAGATCTG TGCAATAAAG AGCAAAGCAT AAAACCAAGT CAAGGCTTTG AGGGAGTGAC CTACAAAATG CATAATGTGA 000400 000401 AACAATGCAA AAGCGAAAGG TGCAAAATCC CCATCAAAGA GCTGGAGGCT GACAGATGCG CCAGTGATAA TTCCCATCTT 000480 000481 CCAACACAGG AGCACAGCTT CCATTTTCCA TAACAGAACA ACAGCCAGAG CAGCTGGAAG GCAGGGCCGC ATCCCAGACT 000560 000561 TCCACCAACA ATGGGATGAG ACTTGACATC TGGAATCACA ACCACAACAG ACCTGAGAGA CCCACCAGCT TGATGACAAG 000640 000641 CTTCTTCTTT CAAAGAAAGT TTTAGGCGGT CATGACCATG GGATGCTGGA CCAGGATGGT AAGCTTCAGG AAACAGAATC 000720 000721 TGGAGAATGC CCAGCTGCTC CCACAGGAAG CATCAGGGAA GAAGAAGAAG AGGTGTGAAG TCTGCCTTCT GCTCTGCTGG 000800 000801 GATCCCTTTC ACATCTCCTT TGCCTCCAGG CAGTTTTGGT TCCTGGCCAT TTCCAGGTGT GACTCACTCA GGATGGTAAG 000880 000881 CATCTTCTCT CCTACCCAGA GTAGAGGATG AAGACCTCAT CTCAGAGGTT GAAGGGAGCT CCAGAGAGAG GTCTCAAACT 000960 000961 TCCAGCATTA ACTGCTAAAG AAGCTTCATG AGCTGCTGGA GAACCTGGGA AATGACCAAT GATAGGGACA GAGCTCAAAT 001040 001041 ACTCTGGGAC ACTCTAGTAG CTGAGAAAGT TCCAACTCCA GGGTGATAGA GGACTGCCTG GCAAACCATC ATCAAAGCAG 001120 001121 AAGACCTGAT ACTAACATCA CAGGCTATGG TTTATTACTG AAGATCAGTG CTTACACCCT GCCAGAGGTT CAGAAGCAAA 001200 001201 CTTATCATTG TTCTCCCTGG AGATGTTGGC CCACATTCTG AAAAGTGTGG TCAGTAGTAG CAACAGAAAG CAATTGTGCT 001280 001281 TGCCAAGCAC AATGTCACTG TCCCCAGCCC TTCCCCCAAC ACAACCCAGT AGGTGCTTCC TGGCTGCAAA CTTGGGAAAG 001360 001361 TCACTTGACC TGTCTGAGGT TCCACTTCCT AATCTGGCCT GGCGAAGATA AGAAAAACAG TTTATTTAAA GTGTCTAGCA 001440 001441 AAGTGCTTGG ACCAAAATAG GACCTCTGAA ATGGTTATGG TAGTGCTGTT AAGGTGATGT TTTAAGTGCT GATGAGCACA 001520 001521 AAGATGGGTA AGATATTCCT TCTGTTAAAA TCTACAGTCT AATGAGAGAG AACAAGATGA ATGCACAATA ACTGTCATTC 001600 001601 AGAACAGGAT TATGAGAAGG TGTGAATTTC TGTGAAAAAT CAGAACAGGG AGTAATATGA TCCCAGGTGA TTGGCAGGGG 001680 001681 GTGGGGGTCT GGATTCAACT GGAGAGGGAG CTGGCAGGGA AGGCTTCCTG GAGGATGAGA GTTCAACAAG GGGCAGGTGT 001760 001761 AGGATGTGGG TGGCCAAGTG ACTGGGCAGA AGGAGCTGCA GAAGTAAGAC CCCAAATCAG GAAGACAAGG GCCTGCTGAG 001840 001841 AAACACGAGC TACAAAGTGC AAGTGCAGGA AGAGTTGGGA TGAGATTAGA AGGGGGTCTG GGGCCAGACT GTGGAAGGCC 001920 001921 CAAATGCCGG GCTAAGGAGT TTGTACTTAA TTCAGTGGTC AACGGGGAGT CATTGGAGGC TGTTGAGCAG GAGAGTTGCT 002000 002001 TTCTTTACAG CTGTGCCAGA CTAAATTAAA CCTAAACAGT ACTTTATAGC TGGAAAGGGA AGGCCCAGGA ATAGCTCTTG 002080 002081 ACTCAGAAAC AGGCATTGGG GAAGGTAATG AGAAACAGCC GTGACTGATC AAAGCAGAGA GGTTAATTAA ATTTGTAATT 002160 002161 ATTGTGAAAG GCCATTAAAA ACCCTAGTTC ACTAGAGATA ACTGCTCTAG TGGGGCTTCA AAGACAAACG CTTCTTTTAA 002240 002241 CCTTGAATAG GGGGATGTTT GCTTCTCTGT GGAGGAGATA TGATTAAGAT ACTTAATAAA TGGTAGATAA ACATGAAAAA 002320 002321 AAAAAAAAAA AAAAA |
Predicted Small Protein
Name | NONHSAT125829_smProtein_671:910 |
Length | 80 |
Molecular weight | 9233.8001 |
Aromaticity | 0.113924050633 |
Instability index | 62.6037974684 |
Isoelectric point | 9.73065185547 |
Runs | 15 |
Runs residual | 0.0495925091035 |
Runs probability | 0.0823176117293 |
Amino acid sequence | MTMGCWTRMVSFRKQNLENAQLLPQEASGKKKKRCEVCLLLCWDPFHISFASRQFWFLAI SRCDSLRMVSIFSPTQSRG |
Secondary structure | LLLLLEEEHHHHHHHLHHHHLLLLHHHLLLLLLEEEEEEEEELLLLLLLHHHHHHHHHEE ELLLLLLEEEEELLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHH HLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTT Toooooooooooooooooo |