NONHSAT125838
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT125838 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2838 nt |
Genomic location |
chr8+:29779029..29811123 |
Exon number |
3 |
Exons |
29779029..29780165,29780553..29780837,29809706..29811123 |
Genome context |
|
Sequence |
000001 CAGAGGACAC CATTGCCTGG AGATGACAGA AGGCTGAGGA TGGAGAGAGG CACTGATAGA GGCCAGACCA GACAAGCAGT 000080
000081 GCCAAGTCCA TAGTGGGACA CCAAAGGGAG GAGGCAATCC CAGATGAGGT CCATCCCAGA ACCAGACCTT GCAGGGACCT 000160 000161 CAAGGAGCTA TGAACATAGA AACCCTATAC ATGATATCAC TTGAATCCCT CCACAAGGGC TTCTGATATT GTCTTAGACC 000240 000241 TTTGGAAAGT TCAGGGGTAG TAGCCTCTGG GCCCATAGTG CTCCCCTGAT GATGCAGCCC CACCCTCAAC TCTTGCCACT 000320 000321 GCAGATGCTC CTTGGGCAGT TTCATCTGGG CCTTTCACAT CAGCTCCCTC CAAATGTGAC TGGACCTCAA ATGGATCTTC 000400 000401 AGACCCCCAT GCCCAACCAC CTCCCAGCTA CCTTCCCTGG ACAACCCACA GGTCACATGA TCACCAGGAA GCCCATGTCT 000480 000481 CTGCATGATA ACCTGGAGAA ACCTACAGAT GCCAGGCTTC TGAATCTCAT TCACCATGCT TCCCAGGGAT CAAGGAAGAA 000560 000561 ATACCCAGAG ATACAGACTG AAAAATCAGG AAACTGGATG GGATTCAGAG CCCTTGGAAT GGAGCCTTCT CATTCATTCA 000640 000641 CCCAACTCCA GTCTAAAACG TGCAGCTCTG AAGCAGGGCT GCTTCATAGA GACTTGAGTA AATAGCACAG TAAAGCCCAG 000720 000721 GTTTTACCAG TGAGGAGGAG AGTAAATACA CTGATCATTT GCAAGAGCAC CTCTTCAGAT ATGGCACCTC TCCTTGGAGA 000800 000801 GAGGAGACTA TGGAAGACAG GGAGACCATT CTAGCTGAAG CTCACACCAC TTACACAACA AAAGATCTAA GTCGAAAAGG 000880 000881 GAGAGAGTAA AGACCTGGCT CACATGGGTG TGAAGTGTGC ATGTGGAAAC ATTGCATCTT TAACATTTCA CAACATCTTG 000960 000961 TAGCAGGCTT ACTATGGCAG GAAGGACAAG TGTGGCTGGC CCAGCCAGTG CTGTCCTGCT CAGACCTTCC TAGGCTTTGC 001040 001041 AATGCTGGGA TAATAGGGAA GCCACACTCA ATGAGCATCT CTCAGCCTCA CATCTCCTGG TCAACCCAGA ATGCCACAAC 001120 001121 CACAGGCCGA ACCACAGATC TGGAGGCTGG GAAATCCAAG AACATGGCAC TGGCATCAGG CAAGGGTCAG CCCATGCTGG 001200 001201 AGGGCAGAAG GCAGAAGTGA GCATGTGAGA CAGAGATAAG AAATTAGGCT GAACTTGCTT GTATAGCAAA CCCAGCCTCT 001280 001281 CAATAACTAA CCCGCTCCAG CAATAATGGC ATTAATCCAT TCATGAGGGC AGAGCCCCCA TGACCTATTC ACATCCTAAA 001360 001361 GGCCCCACAT CAATCATATC TCAACATGAG GTTCAGAGGA CACAAACATT CAAACCATAG CAGTCGGTAG AGAGCATCAA 001440 001441 CATATATTGT GGAGCAGGAA AGCAAACGTC CAGAGAGAAT GTCTATGATG GTACCCAATG AGTCTAGGAC CAGGATTCTT 001520 001521 ATGCTATGGT CACTCATATT TTTGAGTTTC ATCAAATGAA TGTCCTTCAC ATCACCAGCA AGCAGCTTCC ACCTTCTGGA 001600 001601 TCTTCAGAAT GGTCTTAAAG ATGAGGGATG GAGGCCAGGC ATGCTGGCTT ATGACTGTAA TCCCAGCAGG AAGCTAGGAG 001680 001681 CCCAAGGCAG GAAGATTGCT TGAGGCTAAG AGTTCAAGAT CAGTTTGGGC AACACAGCAA AAACCTATCT CTACAAAAAC 001760 001761 TAAAAATAAA AATAAATCAC CTGAGCATGG TGGTGCATGC TTATAGGCTG AGGTGGCTAA GGTGGAAGGA TTGCTTAAGC 001840 001841 CCAGGAAGTT GAGACCGCAG AGAGCCATGA TAGCACCATT GCACTCTGAG CAACAGGGCA AGACCCCAAC TCTAAAAAAA 001920 001921 TAAATAAACA AATAGAGATG GAAGGAAGAA TTAATGGATA AAGTTTTGAG ACTATCCCAC TTATAAAAGA ATTATTTTTA 002000 002001 TTTCTTGAAT ATAAGAAAGA CAGGGTCTTG CCATATTGCC CAGGCTGGTC TCGAATGCCT GGGCTCTATC AATCCAACCA 002080 002081 TGCCCAGTTA ATGTATTTAT TTATATTTAT TTTTTGTAGA GATAGGTTCT TGCTATGATG CCCAAGCTGA TCTTGAACTC 002160 002161 CTGGCCTCAG TTGAGCCACT GTGCCCAGCC TTAGGAGAAT TATTAAATGT ATAAGTAAAT GTGATTCAAT GCTCATACCT 002240 002241 CTCTAAACTT ATTTCATAAA CACATTCAGA ATCATAAAAT GATGGTTCAC TTTTTTAACC CACATTTGTA AAATATAGTA 002320 002321 AACATAGCTA TAACTTAATT ACTATCTTAG CTTGGGTGTC CCTGAAAGCA GAGCTTGAGG CAAAGACTTA CGTGTGATTG 002400 002401 TTTTCCTGAG ATACATGATT CCAAGGAGAG GATGTGAATG ACAGTGTCAG CAAGTGAGCA AGGAGGAAGG GTCCCTAGAA 002480 002481 ATGGGCATTG GCAAGTTGGC CTCCACTGTG GGTAATTGGC TTCTCAGTCC TGAAGGACTA TTTGACAAGC CATATGAAAT 002560 002561 ATGTTTTAGA ACTGTGAATA GAGGAAGAAA CATTTATTCA CCAGTTTCCA AAACCCATTG ATCAAAGGTC ATGCCCCAAG 002640 002641 TGTTAACACC CCCAGTGCCT TCCAGCTTAT GCATATGTGA GCCCTGGTGG GTTTCCAGGC ACCTGGCACC CAGACTGCAA 002720 002721 TGGCAGAGAA GCCCAGGGTG GGATGTTAGA GGGCATAGTA AGGGTCAGAG GCATCTGCAG GAAGGAACTG ATGATCCGCA 002800 002801 GCATCTTGTC ATATTCTGAG AACTTATTAA AAGCAAGC |
Predicted Small Protein
Name | NONHSAT125838_smProtein_920:1219 |
Length | 100 |
Molecular weight | 10867.43 |
Aromaticity | 0.0505050505051 |
Instability index | 45.7333333333 |
Isoelectric point | 9.57000732422 |
Runs | 16 |
Runs residual | 0.027926322044 |
Runs probability | 0.031503930401 |
Amino acid sequence | MWKHCIFNISQHLVAGLLWQEGQVWLAQPVLSCSDLPRLCNAGIIGKPHSMSISQPHISW STQNATTTGRTTDLEAGKSKNMALASGKGQPMLEGRRQK |
Secondary structure | LLLEEEEEHHHHHHHHHHHHHLLEEEELLLLLLLLLLHHHLLLLEELLLLLEELLLLEEE LLLLLLLLLLLLLLLLLLLHHHHHHLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |