NONHSAT126091
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT126091 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1581 nt |
Genomic location |
chr8-:38174373..38176809 |
Exon number |
2 |
Exons |
38174373..38175556,38176413..38176809 |
Genome context |
|
Sequence |
000001 GGGGTTTTTA GCAACATTGG GGCCGGTTGC AGAAACAACC CCTCTCCTGC CTTCCAGACA CTGAGGAAAG TATTCTTGTT 000080
000081 CTCTTCATAT ACCAAGGGAA TGGTGGGAAA AGTCTTTGCT AGAGAGCATG TGGCTGTGTG TTGTCACTTG ATATTCAGCA 000160 000161 CAGGCAGCTA GGATTTAAAC CCTCCCTGAT CTTGAGACAG AGAACTTTAC CCAAAAGATG GGACTGAGTT CAGATTTCAG 000240 000241 ATACATTAAT CACTCATCAT TGCTTAGATT GATGAAAGTA TCTTTTCCCT CTGTTAATAA TTAAAAGGGA AAAAAATTCT 000320 000321 TTGTTAATGC TGTATTTTTC TGTCCAAACA GGTTGAAACA GTTCCTCAGG CTACAGTGAA GACTGGATTA CAGAAAGGGT 000400 000401 CGGCGGACCG GGGAGTGCAG GGCTCTGTCA GATTCAGTGA CAGCTCCGTC TCCGCAGCGA TTGAGGAAAC TGTGGACTGA 000480 000481 GATTCCTGTA CAATTTCATC CCAGAAACTC CAGACTTGTA GTCTCCATGC AAGATTTCTT TGTCGGCGGC TTGATAAACA 000560 000561 GTTTCTTTGT TTTCGATTTT GATTTCGCCA ATCATCATTA TTGGCATTTT CCTGCCTGGT TTCTTCTTCA AGACTCTGAA 000640 000641 CAATTGCTTT AACAGTCAAA TGATTTTTTT TTTTCGGTTT GAGCTGGATG GGTACAGCTT AAATCATGGG TCCAGCCTAA 000720 000721 AAACCACCAT TTAACTTACA CTGATCAATT TCAACATGGA CTGTTTTTGG TTTTTTGTTT TTAAATAAAG CATCATTAAT 000800 000801 GCACATCTGC AGGGGTTTGC CAAACAGCCC AAACTGTATA CATTACAATC ATTAAAAGTT CTTATTTTTT TTAATATTAG 000880 000881 TGCCGTTATC ATGGAGAACA GCATGACAGC TGTCTTTGGC AGTCTGTCAT TTTTCTAGCA TTTTCAGAAA CTCATCGGAA 000960 000961 ATGGCGGTAC CTGTGTTTCC CTTCGAAAGC CTCTCAGTAC AGCACTCCTG TTCCTCTGTT AAAACTCCTT GTTAATCCAG 001040 001041 TGATCTTTTA GGCCAAGGAA ATATTTTGTG ATGGTGTTCT GGGTCCATAC ACCAGCAATG AAGGAGATAG ATTTGTGTAC 001120 001121 TTGTGTTTTT TAATCAGCAT TAACATGGGC AGGCACCCTC ATTTATAGAT GTCAGGAAAC ATTCAGTGAA AAACTTGTAG 001200 001201 AATGGGATGT GATAACGAGG TTCCAGTAAT CTGAGCAGTC TAACGAGGCC CACCTCCTCC ACCACAGAAC GTGGCTATGT 001280 001281 TCCAAGTGCT ACTCTCACTC AGCCTGTTGC GGATCTTCAT GGCCTCAGGA GACTTGTTTC TCCATGGGCT CTTCTGGACT 001360 001361 GCACACTTCC ACCATAGCTT GCTGGGTTGA TCTAGATGTC TGTTTGTTGT ATGGAAATTT TGGGGGAAAA AATCCAAAAC 001440 001441 ACAAACTGTG GGTTGAAATA TTAACCGTCT CCTTGGTTCC TTGGTATTCA CCGTGCCTGA TCTGCACATT TCATCGTGGC 001520 001521 TGTTTCTGTA TAGCCTATAC TGCATTAGCC CAAGAGATTG TTGCTTTGTA ACTTTTTGCA C |
Predicted Small Protein
Name | NONHSAT126091_smProtein_1343:1570 |
Length | 76 |
Molecular weight | 8276.696 |
Aromaticity | 0.12 |
Instability index | 42.2626666667 |
Isoelectric point | 6.78570556641 |
Runs | 11 |
Runs residual | 0.0022695035461 |
Runs probability | 0.0568322333029 |
Amino acid sequence | MGSSGLHTSTIACWVDLDVCLLYGNFGGKNPKHKLWVEILTVSLVPWYSPCLICTFHRGC FCIAYTALAQEIVAL |
Secondary structure | LLLLLLLLLLEEEEEELLEEEEELLLLLLLLLLEEEEEEEEEEEELLLLLEEEEELLLLH HHHHHHHHHHHHHHL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHH HHHHHHHLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTT TTTTTTToooooooo |