NONHSAT126441
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT126441 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2132 nt |
Genomic location |
chr8-:48171254..48173385 |
Exon number |
1 |
Exons |
48171254..48173385 |
Genome context |
|
Sequence |
000001 AGTCGGGCCC GGAGCCCGGA AGGAGTGCCC CGCGGAGAGT CGAGCTTCCT TCCCCGGGGC TGGGGGTTCC GCGGAGCTCG 000080
000081 CTCTGGGCTG TGGCGTTGCT CGCCCGCGAG CTCCTGGGGA GTTCGGGGGA GCTGCTGGGC TGGTGCCTGG AGCGGGGGCC 000160 000161 GCCTCCAAGT ATTGTCTTTC GAATTAAGTT ACTGTCGTCT GTGTTGTCAG GCAACAACTG ACCTTAAATA AAAATGAAAA 000240 000241 CCAGAAGTAG GCTACACATG CAATAGGCTA CACATGCAAT AATGGATACT TAAGGAATGG GAGTGGCTGC TGGTGACTGG 000320 000321 AGCAGAGAGG GTGTGGTTTC CCCATGTTTC GGGGCCGGGG GGAAGGAGTA AAGTCTGTGT TCAGAGCCCA GACGCCATGT 000400 000401 CGGTCATCAC ATCACCGGGA GAATTCGTGG AGCCTGAGGA AAGGCTACGG GGTGCCAGAG TCTGAAGGGG CGGAAGATTG 000480 000481 CATTCCTATC ACGTTCGCCG TGGCGCACAG GGGCTCCGCT GGGGCCGCCG CTCCCGCAGG AGAAGTGGGC CTGAGACGGT 000560 000561 GCGGCGTCGA CCATAGCCGG CCCAGCAGAA GCCGGGGAAG GCCACAAGTG TGACTGGGTC CGAGTACTGT GAAGAAGGCG 000640 000641 CCTCCCATGG AGAAAGCTAC CGGGTAGTTT AACAAGGTGG AAAAGCGTTG GCCTGGGGAG GAGGAAAGGA TGCTCAGAAA 000720 000721 GTTGCCTCAA AAGGACGCAG AAGTGGAGGT GAATCTTCTG TTTCAGAGGC ATTTTTTTGT GCCTCTGTGA GAATGCATTG 000800 000801 CTTCCTGGTT GATCCATCTT CAGGTTTTCT CTCCGTCCTA GTCCCTGTTC TGCCACCATT CTGTGTTTGA ATCTGGTACC 000880 000881 TAAAGCCGCA GATACTTGGT TCATAGTAGA TGTCCACTCT GCAGTGGCTG AAAACACGGA AGAAAAACCA TCTTTGCCTG 000960 000961 GGAAGGACAT TATTGCTAGT GCCATTACTG TCAACAGTTG GAACAAGATA AACGGCATGC CCAATCTAGT TGAGGATTTT 001040 001041 GGACACCGGG CCTCCCACTG GGACTCCGCC GAGAAACCAG GTCTGCCATT GCCACCTCCG CCGGGCCTTG CTGTCTTAGC 001120 001121 ACAGTAAGTG CACCCGACCG CGCCCGGAGT CCCCCTTTCA CTCCCACAAC CAGGCCTGTG GTGAGGCTCC CGCTTGTCAT 001200 001201 CTCCACCAGG AGGTGCTGTC CTGCCGAAAT GTTGGGGTTT TTCTCCAAAC TTCCTCCTGT TCAGAATTCG CCATCTCAGT 001280 001281 AGTGGCATGG ACATCCACCT GGCCACAGCT CACGCAGAAA CCTAGGAATT TTTGTGAACA CGTTTGTGTG TCTTACTAAT 001360 001361 GTGTCCACTC TCCACTACCA CTGTTTCCCA GGCCACTAGT ATCTTTTGCC CAGACTGCTA GTAGCTCTTA ACCCATGTCC 001440 001441 CCTAATCCAC TCTTGCCCCT CACACAGCAC ACACATACAA TCCATTCTCA ACACAGACAC CACAGTGAGG TTTATGCTGT 001520 001521 CTATACTGGC CTTCCCTTTC GGTGGTCAAA CGTGCCTAGC TCCTGCAGCC TTGGGGTCTA ATAAGCATTT GCTCTTCCTT 001600 001601 TTGCCTAAAA GGCTCTGGCC TCCCTCTGCC ATGCCATTTC CTATGCGCCT GTCAAACCTG AACCTGGTGG CCAGCTTCCC 001680 001681 TAAACTAGCA AGCCTGAACC TCCCTGCTCT TCCATGTCCG CAGGACCTCA TGCTCTGTTG AAGATGTTAT AACAATTAGA 001760 001761 ATCTAAATAA TTACGAAAGT TATTTGTTTA CCATGTGGTT CCACCTCCAT GCTGTAAGGT AATACCATTT CTATCTTCTC 001840 001841 CGTTTTTGTA TCTCTATCAG TTAGCACAGC GTCTTCCATA TACAAAGTAC TCAGTTATTT ACTATGGATG AACTGCTAAT 001920 001921 TGTGAAACAG AAATGACTTG CCAGAGGCTG CACAGCTAGT AACTGTTCAG GATTAGAACT CATATGTGAT ACCAAGGTCG 002000 002001 ATGCATTCTC CACTACACCA ATCAGATCAT AGTAGAATCA TGAGGAATTT TTCACTTGAA CATATGAACT CAGCAAAAGG 002080 002081 GAACTGTTGA TAATAAAGAT GAGCCCCTGC AGAAAGGGTC TCTTAAGTCC TC |
Predicted Small Protein
Name | NONHSAT126441_smProtein_1016:1126 |
Length | 37 |
Molecular weight | 3845.3427 |
Aromaticity | 0.0555555555556 |
Instability index | 54.3888888889 |
Isoelectric point | 5.30426025391 |
Runs | 5 |
Runs residual | 0.0415695415695 |
Runs probability | 0.0 |
Amino acid sequence | MPNLVEDFGHRASHWDSAEKPGLPLPPPPGLAVLAQ |
Secondary structure | LLLHHHLLLLLLLLLLLLLLLLLLLLLLLLLLEELL |
PRMN | - |
PiMo | - |