NONHSAT126478
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT126478 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2517 nt |
Genomic location |
chr8-:49340703..49343219 |
Exon number |
1 |
Exons |
49340703..49343219 |
Genome context |
|
Sequence |
000001 ACTGTTTTGA TTCCTGATGC TGCACATCTG CCACGTTTCT GCACAGAGCT ACCAGCCCGG GCAGACACTG AGGACCCTCC 000080
000081 TCGCGCACTG GAGCTGTGGC CTCGGCAGCT GTGGGAATGC GGACAGGAAG CAGGGGACCC TGGAGGCGAG AGGAGGAGGA 000160 000161 CATCCTGCGG GGATAGATAA AAAATAACGG CCGGGCTGTG GGAACCTCTT CCGAGCAAAC ATGTGAGCCC AGGAATTTCC 000240 000241 TGAGCCAGAG ATCTGACTCC GGTTATTTGT TGTAACTGAT TATTTGTTTT CCTGGAGATT TTGCATAATT TTGACAAAGG 000320 000321 GAAAGAAGAT ATAAAGCCAA GACATGCATG ACTGCCCTTC TGAAGCCTCT GCTCACAGAG CAGAGGGATA GGAGGCTGTG 000400 000401 ATTCAGATTA TGGGGCCTGC AGGCTGGGGA GGGCGACCCT GCAGGGGCCC AGGAGCAGGC AGAGTGTGCC CCACAGACCC 000480 000481 CTCCCTGGGG CAGAGGGACA GCAGATTACT GGGCCCGAGA CGCATTAGGT GGCACATGCT GGTTCCCTCT GTCCAGCGAG 000560 000561 CCTCTCCCCC AGCATCATCC AGCCCTGGGC CTCCAGCAGG CAGAGGAGAT CATGACCAGG AAGCAATTCA TCACCATCCA 000640 000641 AGGCCTTAGC AGACTCTGGC TTTCCTTTGA ATTTCCAAGA AAACTGCTCC ATAATTTTTA TCAAGACTTA TCATTTGCCC 000720 000721 ATCTCACCCT ACACACTAGA ATTTTAAGCG ATGAAGTACA TGTGGAGACT TACTTTGTAG TCTTTTAAGA TAATGACCAA 000800 000801 ATGAACATTT CTGGCCTCAC TCAGCATCTG CTCTGACACG GGTTTAAGGG GCTGCCGCGG CCAGGAAGAG GTGGGCCTGG 000880 000881 TCCTGTCGGT GGATGCGCAT TCTGCTTCCC TTAGGCGGGG CTGGGCATGC TGGGACCTCC CCTGTGAGGG GACAGCGGAA 000960 000961 CTCGCAGGGC AGACCCATGT CCCTGGTGTC TTCCTTCTGA TGGGCCTTCC CCTCATGTCG GGATCCACCT TACAGGGCAT 001040 001041 CTGGCCTGGT GTCTGCACAT AGTGAAACAT GGCTGAGTGT CCCTTGCATT AAATGCATGT CCTTGGGATC GCGGTTTCCC 001120 001121 TCTCCTCTCC CTTGTCTTTC CCAAGAAACC CTCCACCCTG ACGACACCCC ACTAATATCT CCATGTGGCC AATTCCTCAC 001200 001201 AGGGTCAAAT ATGCTGGGCC ACCCCCTCTG AGGCCGCAGC TGCATCTCAG GTTTGCATTC TCACCACGGC CGTTCTACTG 001280 001281 ATGGGAGCTT CATTTCTATT TGCTCGAGGT ATTACACCTA TTTTATTTTT CTTTAATGAA ATCCTCCTCA CTTCCATCAC 001360 001361 CTCAGTGCAC CCCTCTCTTC AGAGCTTTCC TTCTCTCCCC TCCTCCCTCC CCATCTTTCT TCCTTCCTGT CCCCAAAGAC 001440 001441 CAGGCCATGG TGCCCTCGAA GGACACAACA GAGCCCCATG TGGACTGGGA AGCTGGCCCT GGCCCAGGGC CCCTCCAGCA 001520 001521 CAGCCTTTCC CCAACTGGCC TTAGGCAAGT GCCCTGCAGT GTCTATCTGC AGCCATCTCT GCCTCATGTG TTTACAAATT 001600 001601 CACCTTCTGC TGTGGATCCC TGTCAACCGC AGGTCCGCCC AACACATTTC GCCCTGGATC TCACTGGGTG GACGTGAATA 001680 001681 TCCACCTGCA CGACAGTAAA GGAAAAAGGA CAAGATGGAG TTGTGGGGGC AGGGGGTGGT TCTTCCCATA AAAACACAGA 001760 001761 AGCATCACAA GAATAATATT TGTTAAAAGC CTCCAGGATT TGGTGCCGAA CATCTCTCAA GGCATCTCCT GATTTCCCAG 001840 001841 AGCTGATGGA AATATTCTGA AGGTATTAAT AGAATGCAGA TGTTGGAGAA TGCGACTTAG AATCCTACTG AACAAATGAC 001920 001921 CCTGTTGGGA GGCAGTTTGC AGTCTCCAGG GACATTCCAC AGAGGGCCCA GCTGATTGTC TCATATTGAA ACAGCATGTC 002000 002001 CCAGCATTCC AGCTAGAAGA AGCGGAACAG GGCTCCTCCA CCAGATATAA ATCACAAGGC AAAGGGCAAC TGAACTCCTT 002080 002081 CAGTCCTGCC CTCCCTCCTT CCTTGGTTCA CCCTCCACCC CCTCCCCCGC TCCCGCCCCC CAAGGAAAAC AAAGCTTGAG 002160 002161 TAAGAGGCTG CCAAGCCAAG CCACGCAGGC GCCAGACGGC CGAGCGCGGC ACACACGACG GCCGTTTGGG AGGCTCACAG 002240 002241 CTTTCGGCAC TGTGGCCCTG ATGTTTTTGC TTCACTGCAA TTTGTTTCTG ATCTCCAGTC AAGTCCTTAC AACGCTGGGA 002320 002321 TCCTCTAGAG AGTTTATACT TTGACCTCGT GACAATTAAC ACCAGAGGCC AAGAAAAAAA AAAAAAACTC GATAAGAGAG 002400 002401 AAACTCAATT GGTGGGAGGT GGAGGGTGGG AGGACGGGCG GGGGCCTATT ACTAAAGTAA ATGCGTTACT TGTGAAATTA 002480 002481 TTTCCCATCC AATAAAAAGA ATGCAGTGTC TTTAAAG |
Predicted Small Protein
Name | NONHSAT126478_smProtein_1280:1543 |
Length | 88 |
Molecular weight | 9462.8507 |
Aromaticity | 0.126436781609 |
Instability index | 65.1724137931 |
Isoelectric point | 9.00738525391 |
Runs | 5 |
Runs residual | 0.0807881773399 |
Runs probability | 0.0334393216747 |
Amino acid sequence | MGASFLFARGITPILFFFNEILLTSITSVHPSLQSFPSLPSSLPIFLPSCPQRPGHGALE GHNRAPCGLGSWPWPRAPPAQPFPNWP |
Secondary structure | LLLEEEELLLLLHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLLLLLL |
PRMN | LLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooooooooooooooooooooooooooo ooooooooooooooooooooooooooo |