NONHSAT126571
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT126571 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4528 nt |
Genomic location |
chr8+:53627118..53631645 |
Exon number |
1 |
Exons |
53627118..53631645 |
Genome context |
|
Sequence |
000001 CCTCCGGCTC TCCGGCCGGC AGGTTGGCTG TCCTGGCCTG ACCCTGGGAG ACTCCGCTGG GGCCGCCTGT TATGGTGCTA 000080
000081 GCTGCCGTCC CGGTGCGTAC TTTCCCAAGG TGAATTTGAC CTTCTTTGCG ACAGCTAGGC CCTGACTAAG GTCGACCCAC 000160 000161 CAAACACTGG ATCGTCCCCA GGCGAAAGAG AGCTTGTTCC CCTCAGCCTG TCGCGGAGGA GCGGAGCCAA TCGAGGGTCT 000240 000241 GGTGTCCCCG TCGCCTCTCC AGGGGCAACC TGCGGACTAG GCCAAGGTCT GTAACAGGAT AACGTACCAG CGCCTGGCCC 000320 000321 AGGCGTTCCT GCCGCCACCT CCCCGCATAT CCGGACCGCC GGGACTGCAC GCAGCTGGCA AGCGTCCCCC TGTTAACTCT 000400 000401 GCAAGGGTGG GGCGGCACCA TTTCTCAGAC CAGGTAAGGC AAGAAAACAT GCAAGAGAGA AGAGAGGGAA GCCTAGGCCA 000480 000481 ATCGGAATGA AAATGTAAAC GCCACAACCA CGTTTTCAGC TTTACAAATA CTGAATCTTG TAGTGGGTCT AGTGGGTTAG 000560 000561 GGGTTAGCAT GAGCACCCTA ATGGTTGGGA GACAGTTTCA GGGGACTCTT GCATTTGTGA AGATGATCAG TCACAGGCAA 000640 000641 TGACTTGAAG CCACGAGGCT TGAATATTAA AATCTGATGA GCAGATGTTA CACGTAGAAT AATTACATAA TAGTTCTCAA 000720 000721 ATTCCTGTTA TATCCAGGAA TATCTGGTAT GAGTGAAAAC TTGGAGGTGC CTTCTCTAAA GTCATCAGGA ATTCTGAGTT 000800 000801 GTGTTTGTAA AAATAGGAGG CACAAGAGGG CACCAAACTG AACAAAATGT TAGGTGGAAA CTGAAAAACG TTGGTTAGCA 000880 000881 TGAACAATTT CAGTTTTCAG TCACACTGAC CAGTATCTGT AAGTTAGGAT TGAGATGGGC TTGTTTTATT TATTTACTTT 000960 000961 TAAATTTGTG CTGCTACATA TCCCAAACAA ATGTGGTCTT TATCATCACT GGCAAGCCAT TTTACTTATT GGTTAAGCTG 001040 001041 GAATTTTATT ACACCACCCC AGCAAGATAG AGGAGAAAAG CGAAAATTAA GTAGTAAATG GTTATTATGC CTTAAGGGAA 001120 001121 GGTGTGAACT GGCAAGACAA AAGAGCCAAA TTTAGTAGTA AAGCATAGTC ATCAGCACAC AGAAAATAAG TGGTGAGGAG 001200 001201 GAGTTTGGCC AGAAAATTGG CTAAGAAAAA TGGCAGTATG ACCAAGAATg aaaagaaaaa gaaagaaaag aaaaACTGCA 001280 001281 GTATGAGGCC TGTAAAGAAC GTATTGGTAC TTGCACTTCC TCTTATTAGT GACATTCATT ATTACAAATA TAACCCAATT 001360 001361 TAGAATGTAA AAATCTTGCT GGAGCTCggt gcagtggctc acacctggaa tcccagcact tatgggaggc cgaggcagga 001440 001441 ggattgcttg agcccaggag ttggagacca gcctgggcaa cgtagtgaaa ccccttctct acaaaaaata caaaaattag 001520 001521 ctgggcgtgg tgatgcacac ctgtggtccc agttactcag aaggctgagg tgggagaatc agttgagccc aggaggtcga 001600 001601 ggctgcagtg aaccatcatg gcaccactgc actcctagcc tggacaacag attgttgccc tgtctgaaaa ataaaaaaaa 001680 001681 aTTTCTGAAC TATGCCAGTG ATAATCTGGT AAATTATAAA TGTTGTCTGA CTTTTTTCTT TGGAAAATGA ATTAATTCAG 001760 001761 TCCTAACCTT CTCTCTTAAT CACAGGTTGC AATAAATTAC CAGAAACGAC TGGTTCATAC CTTATACACC TCCAGTGTAA 001840 001841 ATGTTAAGAG TTTGTATATT CTTAACAGAC TCTTAACAAA CATCAGTAAT TCTTTCCTAG GGATAAGTGA AAATGTACTA 001920 001921 ACATTAATTC TATTATATAT ATGCAAATAT CTAGAGGAAA TACTGTTTAT AAGTTACTAA TACATGTATC CATGGTAGTA 002000 002001 GGTCTTGAAA AGTTACTTTT GTTGCCTATT GGACACCCTC TATTCTCCCT TCCTTAATAA AACAAAAAAA AGAACAAACA 002080 002081 AAATTCTGTA GCATCACTTC TCAACCAAGC TTTCTGATAG GAAGTCCTCA GTCCAATCTC ATTTTTGGCC TACTGTGCAT 002160 002161 TTCTTACTTA ACTTGCAAAC AGATCATTAA CAAGGACCTC CAAATTACAG TAAATTACAG TACTAAGATT TTACTTGAAC 002240 002241 TTTCTAAAGC ATTCGCCATT TTAAATTATT TAACTTTTAT ACTCCTCCTT CCCTTTTGTG CTGTTTCCTT CCTGGCGCTC 002320 002321 CTAAATATCT GTCCATTCTT TGGACCTCTT CCAAATTTTC AGATAATTAT AATAGTGTGC GAATGATGCA AAGGTAATGT 002400 002401 GCCGTGGGAG AGAACAGAAG AGAGAAACCT AATTCTGGCC TCATCACATT ATTGTTTTTT TAAATTTAAT AACTATTTTA 002480 002481 GATGCTTCAG TAGATTTACA GTGAGGGCAA AAGAAAACAG TTTTCTTTAG GAGTATGGAG GGATTATATA GGATGTACAA 002560 002561 TAAATACCCT AAGTACTTCA AATCAGTTCA GATCTTTAaa atcctatttt tccttcagtt ctcaacttca atatcaccta 002640 002641 ctctgggagt cattccctac cAtgcttgtt tgtttgtttg tttgtttgtt tgtttgtttt gagacagagt ctcactctgt 002720 002721 tgcccaagct ggagtgcagt gacaccatct ctgctcaccg cagcctctac ctcccaggtt caaacgattc tcttgtctca 002800 002801 gcctccctag taactgggat tacaggcact tgccaccact cccggctact tttcatactt ttattagatg gggtttcacc 002880 002881 gtgttggcca ggctggtctc gaactcctga tctcaagtga tccacccgct tcagcctccc ccacagtgct gggattacag 002960 002961 gagtgagcca cagcacctgg ccACATGCTT GTAATTTCTT TAGATTCTCA CATTGTATCT TTCAGTGTCA TCTAACATGC 003040 003041 TGACTATAAG CTCCTTTTTA AAAGATGTac tgtacctggt atataatggt atgcactcaa caaacatttg ACAGTACCCC 003120 003121 ACAACTTGTT CAGGCCCTCA ATTTATACCT GAATTGACCT CCTATCCATC TCCATTATTT ACTCCATCCA AGACCAGTCT 003200 003201 AATCAAATCT CTTCCCTGCC TAACAACTTT CATTGGTTTT GTTTTGTATA CTAGATACAA TTTAAACttt tttttttttg 003280 003281 agatggagtc tctctctgtc acccaggctg gagttcagtg gcgcgatctt ggctcactgc aagctccacc gcctgggttc 003360 003361 acaccattca cctgcctcag cctcccaagt agctgggact acaggcgcct accaccacgc ccggctaatt ttttgtattt 003440 003441 tttgtagaga cggggtttca ccatgttagg caggatggtc tcgatctcct gacctcgtga tccgcccgtc ttggcctccc 003520 003521 aaagtgctgg gattacaggc atgagccact gtgcccggcc CTGGGCATGG GTAAACTTCT TAACCTAGCA TGAAAGTCTC 003600 003601 TCCATGATAA GGTATCAACC CATCTCTCCA GTGTATCTCC CAGCACTTTT CTCCccttta tatgtgctct atatgagttt 003680 003681 cctcatccag gaatgttctt ccccacttgt tcacctttaa agtcatccct taaaacacag cttggatgtt aGCAGCTTCT 003760 003761 AACTTCTAGA GTTTCCACTC TTCTATTAAG CTTTGCTCTG TATCTCACAA ctgtaaattt ttctctcccc tcttagtctg 003840 003841 tgaaactctt aagattaaga actatgcatt attaattttt aaattcctgg aacttTATGG AGAGCTTGGC AGTCAGCAAT 003920 003921 TAATACAAGA TTTGCTGTAT GTAATACATT CTGCAAATTT TTATATTTAT ATTGATGGTT GACTAGAAAG TTACTGTGGA 004000 004001 AAATTCCTGC CATCAAATAT CTCATAGGCT TGTAAAGGGG ACCATTCAAA ACAATTGCAG TAACAAAggc agggtgcagt 004080 004081 ggctcacgcc tgtaatacca gctgaggtgg gcagattgct tgagctcagg aatttgagac cagcctggac aacatggtga 004160 004161 aaccctgtct ctagtaaaaa tacaaaaatt agccaggcat ggtggcgccc aactgtagtc ccagatactc aggagactaa 004240 004241 tgtgggagaa tcaattgaac ctggggacgg aggttgccat gagccaagat catgccactg cactccagcc tgggagacag 004320 004321 aatgagactc catctcaaaa aagaagaaTA ATAATAATTG CAggctgggt gcagtggctc acgcctcatg cctgtaatcc 004400 004401 caacactttg ggaggctgag gcgggtggat cacctgaggt caggagttcg agaccagcct gaccaacatg gagaaacccc 004480 004481 gtctctacta aaaatacaac attagccagt ggcgcatgcc tgtaatcc |
Predicted Small Protein
Name | NONHSAT126571_smProtein_2534:2701 |
Length | 56 |
Molecular weight | 6556.8823 |
Aromaticity | 0.236363636364 |
Instability index | 46.8509090909 |
Isoelectric point | 9.18402099609 |
Runs | 10 |
Runs residual | 0.030303030303 |
Runs probability | 0.0539833951598 |
Amino acid sequence | MEGLYRMYNKYPKYFKSVQIFKILFFLQFSTSISPTLGVIPYHACLFVCLFVCLF |
Secondary structure | LLLHHHHHHHLLHHHHHHHHHHHHHHHHHLLLLLLLLLEELHHHHEEEEEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTTToooooooooo |