NONHSAT126571

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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References

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Basic Information

Transcript ID

NONHSAT126571

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

4528 nt

Genomic location

chr8+:53627118..53631645

Exon number

1

Exons

53627118..53631645

Genome context

Sequence
000001 CCTCCGGCTC TCCGGCCGGC AGGTTGGCTG TCCTGGCCTG ACCCTGGGAG ACTCCGCTGG GGCCGCCTGT TATGGTGCTA 000080
000081 GCTGCCGTCC CGGTGCGTAC TTTCCCAAGG TGAATTTGAC CTTCTTTGCG ACAGCTAGGC CCTGACTAAG GTCGACCCAC 000160
000161 CAAACACTGG ATCGTCCCCA GGCGAAAGAG AGCTTGTTCC CCTCAGCCTG TCGCGGAGGA GCGGAGCCAA TCGAGGGTCT 000240
000241 GGTGTCCCCG TCGCCTCTCC AGGGGCAACC TGCGGACTAG GCCAAGGTCT GTAACAGGAT AACGTACCAG CGCCTGGCCC 000320
000321 AGGCGTTCCT GCCGCCACCT CCCCGCATAT CCGGACCGCC GGGACTGCAC GCAGCTGGCA AGCGTCCCCC TGTTAACTCT 000400
000401 GCAAGGGTGG GGCGGCACCA TTTCTCAGAC CAGGTAAGGC AAGAAAACAT GCAAGAGAGA AGAGAGGGAA GCCTAGGCCA 000480
000481 ATCGGAATGA AAATGTAAAC GCCACAACCA CGTTTTCAGC TTTACAAATA CTGAATCTTG TAGTGGGTCT AGTGGGTTAG 000560
000561 GGGTTAGCAT GAGCACCCTA ATGGTTGGGA GACAGTTTCA GGGGACTCTT GCATTTGTGA AGATGATCAG TCACAGGCAA 000640
000641 TGACTTGAAG CCACGAGGCT TGAATATTAA AATCTGATGA GCAGATGTTA CACGTAGAAT AATTACATAA TAGTTCTCAA 000720
000721 ATTCCTGTTA TATCCAGGAA TATCTGGTAT GAGTGAAAAC TTGGAGGTGC CTTCTCTAAA GTCATCAGGA ATTCTGAGTT 000800
000801 GTGTTTGTAA AAATAGGAGG CACAAGAGGG CACCAAACTG AACAAAATGT TAGGTGGAAA CTGAAAAACG TTGGTTAGCA 000880
000881 TGAACAATTT CAGTTTTCAG TCACACTGAC CAGTATCTGT AAGTTAGGAT TGAGATGGGC TTGTTTTATT TATTTACTTT 000960
000961 TAAATTTGTG CTGCTACATA TCCCAAACAA ATGTGGTCTT TATCATCACT GGCAAGCCAT TTTACTTATT GGTTAAGCTG 001040
001041 GAATTTTATT ACACCACCCC AGCAAGATAG AGGAGAAAAG CGAAAATTAA GTAGTAAATG GTTATTATGC CTTAAGGGAA 001120
001121 GGTGTGAACT GGCAAGACAA AAGAGCCAAA TTTAGTAGTA AAGCATAGTC ATCAGCACAC AGAAAATAAG TGGTGAGGAG 001200
001201 GAGTTTGGCC AGAAAATTGG CTAAGAAAAA TGGCAGTATG ACCAAGAATg aaaagaaaaa gaaagaaaag aaaaACTGCA 001280
001281 GTATGAGGCC TGTAAAGAAC GTATTGGTAC TTGCACTTCC TCTTATTAGT GACATTCATT ATTACAAATA TAACCCAATT 001360
001361 TAGAATGTAA AAATCTTGCT GGAGCTCggt gcagtggctc acacctggaa tcccagcact tatgggaggc cgaggcagga 001440
001441 ggattgcttg agcccaggag ttggagacca gcctgggcaa cgtagtgaaa ccccttctct acaaaaaata caaaaattag 001520
001521 ctgggcgtgg tgatgcacac ctgtggtccc agttactcag aaggctgagg tgggagaatc agttgagccc aggaggtcga 001600
001601 ggctgcagtg aaccatcatg gcaccactgc actcctagcc tggacaacag attgttgccc tgtctgaaaa ataaaaaaaa 001680
001681 aTTTCTGAAC TATGCCAGTG ATAATCTGGT AAATTATAAA TGTTGTCTGA CTTTTTTCTT TGGAAAATGA ATTAATTCAG 001760
001761 TCCTAACCTT CTCTCTTAAT CACAGGTTGC AATAAATTAC CAGAAACGAC TGGTTCATAC CTTATACACC TCCAGTGTAA 001840
001841 ATGTTAAGAG TTTGTATATT CTTAACAGAC TCTTAACAAA CATCAGTAAT TCTTTCCTAG GGATAAGTGA AAATGTACTA 001920
001921 ACATTAATTC TATTATATAT ATGCAAATAT CTAGAGGAAA TACTGTTTAT AAGTTACTAA TACATGTATC CATGGTAGTA 002000
002001 GGTCTTGAAA AGTTACTTTT GTTGCCTATT GGACACCCTC TATTCTCCCT TCCTTAATAA AACAAAAAAA AGAACAAACA 002080
002081 AAATTCTGTA GCATCACTTC TCAACCAAGC TTTCTGATAG GAAGTCCTCA GTCCAATCTC ATTTTTGGCC TACTGTGCAT 002160
002161 TTCTTACTTA ACTTGCAAAC AGATCATTAA CAAGGACCTC CAAATTACAG TAAATTACAG TACTAAGATT TTACTTGAAC 002240
002241 TTTCTAAAGC ATTCGCCATT TTAAATTATT TAACTTTTAT ACTCCTCCTT CCCTTTTGTG CTGTTTCCTT CCTGGCGCTC 002320
002321 CTAAATATCT GTCCATTCTT TGGACCTCTT CCAAATTTTC AGATAATTAT AATAGTGTGC GAATGATGCA AAGGTAATGT 002400
002401 GCCGTGGGAG AGAACAGAAG AGAGAAACCT AATTCTGGCC TCATCACATT ATTGTTTTTT TAAATTTAAT AACTATTTTA 002480
002481 GATGCTTCAG TAGATTTACA GTGAGGGCAA AAGAAAACAG TTTTCTTTAG GAGTATGGAG GGATTATATA GGATGTACAA 002560
002561 TAAATACCCT AAGTACTTCA AATCAGTTCA GATCTTTAaa atcctatttt tccttcagtt ctcaacttca atatcaccta 002640
002641 ctctgggagt cattccctac cAtgcttgtt tgtttgtttg tttgtttgtt tgtttgtttt gagacagagt ctcactctgt 002720
002721 tgcccaagct ggagtgcagt gacaccatct ctgctcaccg cagcctctac ctcccaggtt caaacgattc tcttgtctca 002800
002801 gcctccctag taactgggat tacaggcact tgccaccact cccggctact tttcatactt ttattagatg gggtttcacc 002880
002881 gtgttggcca ggctggtctc gaactcctga tctcaagtga tccacccgct tcagcctccc ccacagtgct gggattacag 002960
002961 gagtgagcca cagcacctgg ccACATGCTT GTAATTTCTT TAGATTCTCA CATTGTATCT TTCAGTGTCA TCTAACATGC 003040
003041 TGACTATAAG CTCCTTTTTA AAAGATGTac tgtacctggt atataatggt atgcactcaa caaacatttg ACAGTACCCC 003120
003121 ACAACTTGTT CAGGCCCTCA ATTTATACCT GAATTGACCT CCTATCCATC TCCATTATTT ACTCCATCCA AGACCAGTCT 003200
003201 AATCAAATCT CTTCCCTGCC TAACAACTTT CATTGGTTTT GTTTTGTATA CTAGATACAA TTTAAACttt tttttttttg 003280
003281 agatggagtc tctctctgtc acccaggctg gagttcagtg gcgcgatctt ggctcactgc aagctccacc gcctgggttc 003360
003361 acaccattca cctgcctcag cctcccaagt agctgggact acaggcgcct accaccacgc ccggctaatt ttttgtattt 003440
003441 tttgtagaga cggggtttca ccatgttagg caggatggtc tcgatctcct gacctcgtga tccgcccgtc ttggcctccc 003520
003521 aaagtgctgg gattacaggc atgagccact gtgcccggcc CTGGGCATGG GTAAACTTCT TAACCTAGCA TGAAAGTCTC 003600
003601 TCCATGATAA GGTATCAACC CATCTCTCCA GTGTATCTCC CAGCACTTTT CTCCccttta tatgtgctct atatgagttt 003680
003681 cctcatccag gaatgttctt ccccacttgt tcacctttaa agtcatccct taaaacacag cttggatgtt aGCAGCTTCT 003760
003761 AACTTCTAGA GTTTCCACTC TTCTATTAAG CTTTGCTCTG TATCTCACAA ctgtaaattt ttctctcccc tcttagtctg 003840
003841 tgaaactctt aagattaaga actatgcatt attaattttt aaattcctgg aacttTATGG AGAGCTTGGC AGTCAGCAAT 003920
003921 TAATACAAGA TTTGCTGTAT GTAATACATT CTGCAAATTT TTATATTTAT ATTGATGGTT GACTAGAAAG TTACTGTGGA 004000
004001 AAATTCCTGC CATCAAATAT CTCATAGGCT TGTAAAGGGG ACCATTCAAA ACAATTGCAG TAACAAAggc agggtgcagt 004080
004081 ggctcacgcc tgtaatacca gctgaggtgg gcagattgct tgagctcagg aatttgagac cagcctggac aacatggtga 004160
004161 aaccctgtct ctagtaaaaa tacaaaaatt agccaggcat ggtggcgccc aactgtagtc ccagatactc aggagactaa 004240
004241 tgtgggagaa tcaattgaac ctggggacgg aggttgccat gagccaagat catgccactg cactccagcc tgggagacag 004320
004321 aatgagactc catctcaaaa aagaagaaTA ATAATAATTG CAggctgggt gcagtggctc acgcctcatg cctgtaatcc 004400
004401 caacactttg ggaggctgag gcgggtggat cacctgaggt caggagttcg agaccagcct gaccaacatg gagaaacccc 004480
004481 gtctctacta aaaatacaac attagccagt ggcgcatgcc tgtaatcc
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Predicted Small Protein

Name NONHSAT126571_smProtein_2534:2701
Length 56
Molecular weight 6556.8823
Aromaticity 0.236363636364
Instability index 46.8509090909
Isoelectric point 9.18402099609
Runs 10
Runs residual 0.030303030303
Runs probability 0.0539833951598
Amino acid sequence MEGLYRMYNKYPKYFKSVQIFKILFFLQFSTSISPTLGVIPYHACLFVCLFVCLF
Secondary structure LLLHHHHHHHLLHHHHHHHHHHHHHHHHHLLLLLLLLLEELHHHHEEEEEEEEEL
PRMN LLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTTToooooooooo