NONHSAT126615

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT126615

Source

NONCODE4.0

Same with

,

Classification

intronic(S)

Length

2239 nt

Genomic location

chr8+:54811569..54821517

Exon number

2

Exons

54811569..54813639,54821350..54821517

Genome context

Sequence
000001 ATATTAAAAT TTCTGCTGTT AGGAACTTTA TGTTCCCAGC TGTGATGTGT TAACAGCATT TCCTTCAGAA GTCAGGCAGC 000080
000081 TGGCCCCCAC ACTAACTACA ATGCTGTGCG ATGCTCCTGT GTCTGTCCTC CTGGCACCAC AATGCCTGTG TGCCATGTTT 000160
000161 GTCACCAGCA TGCTACATGT GCTATGTCCA CTGCCTTTTG TCTCTCTATT CTCTTTATTG GGTATTTTTT CCTTCCTTTT 000240
000241 CTCAGGTGTC TCAGGTTTAA GTCACAGAAT CATGACTTTA TGGAACAGAA AGGGGAACGA CTTAGCCAAC AGCAGCCCAG 000320
000321 AGCAGGCAGC TGACTTATGT CAGGCGAACA AGTTAGTGAC AGAACAGAGC TCACAACCTG CATTTCTGTA CTTTTTGGTA 000400
000401 CTCAATCCAC TATGCTGCCT TTAAGGTAAA TTAAAATACC AGCATTTAAA AACTGTTTTA TGACATCCAT TCATAGAGAT 000480
000481 GTGTAACCAT CACTGCAATT CATTTTAGAA TATTTTCATC ACTCCAAGAA GAGACCCAGC ACCCCTTAGC CGTCAACCAC 000560
000561 CAAGTCCCTT CCTCCAGCAG CCCCAGGCAG CCACTGAGCT ACTTTCTGTT TCCACAGATT TGCCTGTTCC GAACATTTTA 000640
000641 TATAGATGGG TTCATATGAT ACGTGGCCTT TTCTAGCTGG CTTCTCTCAC TCAGCATCCT GTTTGCACAG TTCAGCCATG 000720
000721 TAGTGGTAGG TAACCATGGC ATGTCAGAAA GAGAAGAAAA ACTTGGTGGT CATTTTGCCT CCAGTTCAGA AGACAAAACC 000800
000801 AAGGCCTAGG GAGGTGGCTT CAGGCTCTAG TCACAAAGCC CAGCAGGGGA AGAGTGAGGA TCCAGCTAGA CCCCTCACCA 000880
000881 CTCACCGCCC TCAGCAGACC TCCTGGTGCT TCCCTGACCT GCGTGCAAAG GTGCTCTGCT TGGTGAACTG GCAGATTTAC 000960
000961 ATGCCTGCCC TCTAGTTTTT CTGTTCTCAG CTTTGCCCAG CTATTTTTGT CACCGCTTGC GTGTCCTTGA AGGCATTCTG 001040
001041 GGTTACTTCT AGATTTGTGA ATGGTTGAGG TGCCAGATGT CTGAGGGTGG GTAAATGGGG TCCCTGCTAT TTCAGTCCCT 001120
001121 GCTGAATATA GACACAAAGG TACAGGACCA ATTTGTTTAC AGTCTTTTTT TCCCCTAGGT TGGAGTGCAG TGGTGCAATC 001200
001201 ATAGCTCACT GCAGCCTTAA ACCCCTGGGC TCAAGCGATC CTCCCACCTC AGCCTCCTGA GTGGGTGGAA CTACAGGTGT 001280
001281 GTGCCACCAT GCCTGGCTGA TTTTTAAATT TTTTTTGGAG ACGGGGTCTC GCTATGTTGC CCAGGCTGGT CTCAAACTCC 001360
001361 TGGACTTAAG CCATCCACCT GCCTCAGCCT CCCAAAGTGC TGAGATTACA GTTGTGAGCC ACTGTACCCA GCCTTGTTTA 001440
001441 CAATCTTAAA ACACCTATAA GGTCTTTCTA TATTACTCAT CGTATTTTTA CATTAAATAT CAATGTTTAT ATAGCAAGAA 001520
001521 ATGTAAACAA AAAATAAAAT ATCAATAAGT ACTAAATTTA AAGAAATAAG GCACCAGAGT AGCACCTAGT TTTCAGAGAC 001600
001601 CTTTCACATA CATTCTCTCA TTTAATCCTC TTAACAAATC TCAAGGCAGC TAATGTTATA CACATGAGGA CGTGGAGGCT 001680
001681 TAGGAAGGTG AAGTAATTTG GTCCAGGCCT CACAAGTGGC AAAGGTCAGG ATGGCAGGGC TCCTCTGACT GGACACCCTA 001760
001761 TGCTCTCCTC CCGCTATTGC ACCAGACTGC TGGACATTCC TGGCCCAGTT CTCTGTTTTA AGCGAGTGTT CTCTAGGGAC 001840
001841 CAGCTGTGGG CCAGAAGGTC AGCACAGCAC TCAGAGGACT CCTCCAAGTA AACCCAATAT TCCCACTCGG CCCTCTGACC 001920
001921 CCAGTCACGG CAGGGCTGTT CACGTCCTGA CCTGGCTCCA TGGGACACTC CTCCACACCC CTCACAGCAT CCCACTGTAC 002000
002001 TCTCTCGACC TCGGTCTACC AACAGCAACA TGCCCTGGCC TTCATACTTG TCTCTTTTTT TTTTTTTTTT TTGAGACCCT 002080
002081 GTCTCAAGAT AAATAAATAA ATAAACAAAC TATCATATCA ACACAGAAAG TTATAAAGCA GCATTCAAAA TCATATATAT 002160
002161 ACTCTTGTAA TCATGTAAAT AATTTTTGTG AACAAAGGGA AGGAAATGCA AAATAAAATT TAAAATATTG GCATGATGG
[back to top]

Predicted Small Protein

Name NONHSAT126615_smProtein_110:259
Length 50
Molecular weight 5678.7132
Aromaticity 0.183673469388
Instability index 84.6326530612
Isoelectric point 6.77764892578
Runs 7
Runs residual 0.019194704909
Runs probability 0.0210462563404
Amino acid sequence MLLCLSSWHHNACVPCLSPACYMCYVHCLLSLYSLYWVFFPSFSQVSQV
Secondary structure LEEEELLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLEEELL
PRMN LLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLLLLLL
PiMo oooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTiiiiiiiii