NONHSAT126615
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT126615 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(S) |
Length |
2239 nt |
Genomic location |
chr8+:54811569..54821517 |
Exon number |
2 |
Exons |
54811569..54813639,54821350..54821517 |
Genome context |
|
Sequence |
000001 ATATTAAAAT TTCTGCTGTT AGGAACTTTA TGTTCCCAGC TGTGATGTGT TAACAGCATT TCCTTCAGAA GTCAGGCAGC 000080
000081 TGGCCCCCAC ACTAACTACA ATGCTGTGCG ATGCTCCTGT GTCTGTCCTC CTGGCACCAC AATGCCTGTG TGCCATGTTT 000160 000161 GTCACCAGCA TGCTACATGT GCTATGTCCA CTGCCTTTTG TCTCTCTATT CTCTTTATTG GGTATTTTTT CCTTCCTTTT 000240 000241 CTCAGGTGTC TCAGGTTTAA GTCACAGAAT CATGACTTTA TGGAACAGAA AGGGGAACGA CTTAGCCAAC AGCAGCCCAG 000320 000321 AGCAGGCAGC TGACTTATGT CAGGCGAACA AGTTAGTGAC AGAACAGAGC TCACAACCTG CATTTCTGTA CTTTTTGGTA 000400 000401 CTCAATCCAC TATGCTGCCT TTAAGGTAAA TTAAAATACC AGCATTTAAA AACTGTTTTA TGACATCCAT TCATAGAGAT 000480 000481 GTGTAACCAT CACTGCAATT CATTTTAGAA TATTTTCATC ACTCCAAGAA GAGACCCAGC ACCCCTTAGC CGTCAACCAC 000560 000561 CAAGTCCCTT CCTCCAGCAG CCCCAGGCAG CCACTGAGCT ACTTTCTGTT TCCACAGATT TGCCTGTTCC GAACATTTTA 000640 000641 TATAGATGGG TTCATATGAT ACGTGGCCTT TTCTAGCTGG CTTCTCTCAC TCAGCATCCT GTTTGCACAG TTCAGCCATG 000720 000721 TAGTGGTAGG TAACCATGGC ATGTCAGAAA GAGAAGAAAA ACTTGGTGGT CATTTTGCCT CCAGTTCAGA AGACAAAACC 000800 000801 AAGGCCTAGG GAGGTGGCTT CAGGCTCTAG TCACAAAGCC CAGCAGGGGA AGAGTGAGGA TCCAGCTAGA CCCCTCACCA 000880 000881 CTCACCGCCC TCAGCAGACC TCCTGGTGCT TCCCTGACCT GCGTGCAAAG GTGCTCTGCT TGGTGAACTG GCAGATTTAC 000960 000961 ATGCCTGCCC TCTAGTTTTT CTGTTCTCAG CTTTGCCCAG CTATTTTTGT CACCGCTTGC GTGTCCTTGA AGGCATTCTG 001040 001041 GGTTACTTCT AGATTTGTGA ATGGTTGAGG TGCCAGATGT CTGAGGGTGG GTAAATGGGG TCCCTGCTAT TTCAGTCCCT 001120 001121 GCTGAATATA GACACAAAGG TACAGGACCA ATTTGTTTAC AGTCTTTTTT TCCCCTAGGT TGGAGTGCAG TGGTGCAATC 001200 001201 ATAGCTCACT GCAGCCTTAA ACCCCTGGGC TCAAGCGATC CTCCCACCTC AGCCTCCTGA GTGGGTGGAA CTACAGGTGT 001280 001281 GTGCCACCAT GCCTGGCTGA TTTTTAAATT TTTTTTGGAG ACGGGGTCTC GCTATGTTGC CCAGGCTGGT CTCAAACTCC 001360 001361 TGGACTTAAG CCATCCACCT GCCTCAGCCT CCCAAAGTGC TGAGATTACA GTTGTGAGCC ACTGTACCCA GCCTTGTTTA 001440 001441 CAATCTTAAA ACACCTATAA GGTCTTTCTA TATTACTCAT CGTATTTTTA CATTAAATAT CAATGTTTAT ATAGCAAGAA 001520 001521 ATGTAAACAA AAAATAAAAT ATCAATAAGT ACTAAATTTA AAGAAATAAG GCACCAGAGT AGCACCTAGT TTTCAGAGAC 001600 001601 CTTTCACATA CATTCTCTCA TTTAATCCTC TTAACAAATC TCAAGGCAGC TAATGTTATA CACATGAGGA CGTGGAGGCT 001680 001681 TAGGAAGGTG AAGTAATTTG GTCCAGGCCT CACAAGTGGC AAAGGTCAGG ATGGCAGGGC TCCTCTGACT GGACACCCTA 001760 001761 TGCTCTCCTC CCGCTATTGC ACCAGACTGC TGGACATTCC TGGCCCAGTT CTCTGTTTTA AGCGAGTGTT CTCTAGGGAC 001840 001841 CAGCTGTGGG CCAGAAGGTC AGCACAGCAC TCAGAGGACT CCTCCAAGTA AACCCAATAT TCCCACTCGG CCCTCTGACC 001920 001921 CCAGTCACGG CAGGGCTGTT CACGTCCTGA CCTGGCTCCA TGGGACACTC CTCCACACCC CTCACAGCAT CCCACTGTAC 002000 002001 TCTCTCGACC TCGGTCTACC AACAGCAACA TGCCCTGGCC TTCATACTTG TCTCTTTTTT TTTTTTTTTT TTGAGACCCT 002080 002081 GTCTCAAGAT AAATAAATAA ATAAACAAAC TATCATATCA ACACAGAAAG TTATAAAGCA GCATTCAAAA TCATATATAT 002160 002161 ACTCTTGTAA TCATGTAAAT AATTTTTGTG AACAAAGGGA AGGAAATGCA AAATAAAATT TAAAATATTG GCATGATGG |
Predicted Small Protein
Name | NONHSAT126615_smProtein_110:259 |
Length | 50 |
Molecular weight | 5678.7132 |
Aromaticity | 0.183673469388 |
Instability index | 84.6326530612 |
Isoelectric point | 6.77764892578 |
Runs | 7 |
Runs residual | 0.019194704909 |
Runs probability | 0.0210462563404 |
Amino acid sequence | MLLCLSSWHHNACVPCLSPACYMCYVHCLLSLYSLYWVFFPSFSQVSQV |
Secondary structure | LEEEELLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHLLLLLLEEELL |
PRMN | LLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLLLLLL |
PiMo | oooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTiiiiiiiii |