NONHSAT126648
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT126648 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
5183 nt |
Genomic location |
chr8+:56449431..56454613 |
Exon number |
1 |
Exons |
56449431..56454613 |
Genome context |
|
Sequence |
000001 TCATTGCTCT TCTGCTGTTC ATATCATCTT AGTTATTCAC AAAGTCTACT TGATAAAATG GCTCAAGGGA AATACAAGTT 000080
000081 TCTTAAGTTT TTATTCTTCA AATAGAAGTT TTAATTTTAA GCATTCCTTA TGATATTTTT TAAGCCTAAA AACCATTCAA 000160 000161 ATTGCTTGAC AAAATTATTT CATGGTGAAT TTTATAAGGT TGATAGAAGT AAAAGCTATT TTTCCCAAAA CAAACAAAAT 000240 000241 ACCATACATA GTTTTTTGGG TTTGGTTTGT TGATGTCATG CCAATTTCCA AGCACCAACT GGTTACCACA AACATGGGAA 000320 000321 TATTTAGTGA TATCTTTGTA GTCATCGTTA AAATTCCTGG GAAAAAAAGA AAAAGTTTAC GTCAAAGGAA AATTCACCTC 000400 000401 CCACAAGGAA AGTCTGAGAT GTTCATCCTG ACATTTGCGT TCCTGATTAT TTGTGGACAT TTCTTCATTG TGACTGTAGG 000480 000481 AAGCTGAGCT TGTTTCTCCT AATTTGACAC TGGGTTGGTG AGCATTGTCT CAAATTTTGT GCTTGCCTCA TTTATGGTCC 000560 000561 TGAAGCTTAG CAGAAAAACA GACAAGCTAT TCAGACCAGT TTTCTTTAAG AGCACTTATG TTGCAGAACA TGATACAAAT 000640 000641 GATTCACCGT GAGCAGGCAC ACAGAGTACG GAAAGGTATT CAACTATGCA AAGATATTGA GGGGATTTCC AGAGAAAACT 000720 000721 TAAATGTTTT GAAGATTTGT AGGTAGGGTT TTGATTGTGT CACATTCTAC ACTCAGTGCC AAGTTAGAAT GTCTTTATGG 000800 000801 GGAAGGCAAT AAAGTTACTT GTTGGGTCCT TCCTTCCCTT ACAAACAGAA TGTTTTTATG AAATCAAATG GATCCTCCAC 000880 000881 TTTGTGTAGT AAGGACCCCC CAGGCCCCAC AACATCATCA CTGTGAGTCC TATCGCAGAT GTGTGTACCA GCCCAATTCA 000960 000961 GTTTTGCTTT TCTTTTTCCC TAAGATTTTT ACTTCACCAA ATCCCATTTC AAATCTTTTT ACCTTCATGT TACCAACAGG 001040 001041 ATGTTTAGTT GAATCAGCAA CAAAGACGTG ACAACCTATT GTCCTCCACA AAAGCATGAG TCATTTTATT CAGTGATCTT 001120 001121 TGGTAGTACG ATAATCAATG GAATTTATGG TGTCGTAGAA AACCAAAAAT CCATGTTGAA TATAGTGACT GTCTTAAATA 001200 001201 TACTTAAATA TGTTATTCTA CAAAACAATA TCCTTTTACA CTATGGGATG GATTCCTTTC TGGATGCAGG GATGGGAGGG 001280 001281 TCTATGGGTC AGTGACTGGG ACAAAGGAAC TGGGAATCTC TGCACAACTG AGCCCTAATC CCTGGTCCAT CTCTCCAGCC 001360 001361 TCAGAAactc accctcagcc tcattttccc catatgcaaa agagagatat ttatttacct acctcatagg ggtgttgtgg 001440 001441 agattagcta gatttgctaa agtgcttgta ggttagaaag tgctgtCATT CCTGAGAACT GGCATTAACA GAAGAGAGCT 001520 001521 GTGTGCAGCA CGGAGGAAGT GGAGTCTGAG GAATACAACA GCAACAACTC ACCAAGCAGA GAATACAATG GTTCTTCATC 001600 001601 ACTATATAAA ACTAACACTT TTCCTTCAAA GGTCTATGTA TAATTTTCTT CAATGATTAG CTTTTTAATG AGACAACTCC 001680 001681 TTTCATCCAG ACATTCAGAT GCTTTATATA AGTTGGCAAT TTTCCTGTTA ACCAAACTGA ATTTTATTAA ATGTTTATTA 001760 001761 AAATGCACCC AGAAAACTTG TCTCCTCCTG ATGCCTGAGG GGTTTGCATG CCTGATCCCA AGCTGCATTT TTTCAGAATG 001840 001841 CGTGCATGAT GCCCCAGTTC TGTACTCATG ATCACCAGGT GGCGTTCTGA AATCCACTAC TGGGGAAAGA TTTTTAACAG 001920 001921 ATATTAGTGA GATTAGAGTT GGTGTCATTT CCATTGAGTA TCCTCTTCAC CCCTAAGATG ACACATCTTT ACAACACAAT 002000 002001 AAAAGAACGT AAAGCCTTAT TTCCACCTGT AACTCCTGAA TTGATTCATT TTCACGTTAT AACTACATTT CAAATATTTC 002080 002081 GGAGAAGTTT TTACACAGGG CTTCAGCTAT ATACTGATAT ACATATGCTT ACATGTGCTT AGGTGGGAAT TCTACTAAAG 002160 002161 GATAAAGGAC ACAGTGTGAA AACAACATCA GAGAATATCC TGTACAACTT CCCCAAAAGT GACAAGTTTT CTTGTACTTA 002240 002241 AAAATTTAAT CCTGATAAGA ACTAATGTGA AATAACATCA TTTTGGTTTA TAAATATTTG TAATTTTTGA GACATAGAGG 002320 002321 CAATATCATG ATATAGGAAT ACATTCATAA AACTAGACTA GCAAAGCAGA TAATGTTTTC ATGATATGGC TTCATGAGGC 002400 002401 AAAGTTGTTG TACATCAATA TTATCATTGT GCCCTTATTT AAGGATTATA TTCCATTGTG AAAAAAATGT GCACACTCTT 002480 002481 AAAAACACAA AATGGGTTTC AGAAAGTTTA CCTTGAGAAG TGGGTTTGAA ATCATCTTGT GCTTGGAGCT GACATAAGAT 002560 002561 ACGCACTCAA TATAATCTCT TCTGGATTCT AAAATCTAAT TGGCAGTGAT ATTTCAAAGC CTTAACATTT CAAGGTGGTT 002640 002641 AATTAATATC TAATGCATGG TATTAAACTT TCTGAAGCAT GAATTTAACC TAGGCAATTA TCTGATTCAT TTTTTTTAAA 002720 002721 GTTTGTGCTG CCAAACCAGA CTGAAGTATT GTTTTTCTGG ACTAATACTA TGAGAATAGT AAGTGAGTCA AAAAATAATT 002800 002801 GGGACTGTCC TTTTTCCCCT GCCCACTTCC TAGTATCAAT ACTCCCCCAA CCAGAAATGC AGCAGAATAT CCTTTTTGCT 002880 002881 ATAAAGGAAA ATACTGTGTT TTTATTTGTT TTTGCAGAAG AAAACTGGTG TTGCCTATTT GGACTAGATG TAGGGGCCTG 002960 002961 GAAGAAGGAA GTGGCAGATT CACAGGTGGG GTGACCAGGA TGGGAGGAAA ATAGTGGGGC GAGTATGTCA TGGGGAGATT 003040 003041 TTGCCACAAA GATACAAAAC AGAATTGAAG TGTGTTAGAG CTGGACAACC CTTTGAAATG ACAGAGTCTA GATTCTTCAC 003120 003121 CAAACAGATG AAAAGACAAG TAGAGACAAC ATGTACTTGA GATATAAGCT ATACATCTCA TCACTGGAAG AAAGGAGACT 003200 003201 TCAGCCTCTT TTCAAGGCTT TCCAGACCAC ATGGAACTCT CCAGAGCCCT CCTTGAAAGT TTTTAGAAAA ACTACCATTT 003280 003281 TCAGCAAAGA TTCATGTGAT TATGCTGCTG AGGACCAGTC ATTCTGTAAA CATCACATAT GTGATGCTTT GTAAATGTAT 003360 003361 TAATTGTGGT CAATTTTCAT GGATATTTCC CATTAACATT GTATTCCATG AACAAGTGAT AGAAAACATA TGGAAATTCT 003440 003441 CTTTTGATCA AAAGGAGTGT CTCCCAATTA GTTTACGTGT GTTAGTATTG CTGACATATT ATTATCATCA CAAAATTCCT 003520 003521 TTTATATCTA GATGGTATCA AATAAGAAAA AAATGCATCA TTTGGTCAAT TGCTTATTGA AGATCCCAGC TGAAGCCTTT 003600 003601 CTTTGGTAAA GAGCGCAGAA AGAGACCATA GCTATTCTTG GATGAGAACC TTGCCTCTAC TAAATAGTTT CTGCTTTTCC 003680 003681 TCTCTGTAGC CAGACAGCTC AATAGCCTAG GGAGAGTCGA TGAAGGATAT GCAAATTACA TTTTTCCCAT TCTCAGAACA 003760 003761 AAGACAGCAA CCAATGAGCC AGAGGTTTCT TCTCTCTTTG AAACCAAATA GCACGCTGAA TTTAGGGCTA TGACAAAAAT 003840 003841 GTTGTTAAAG CAAGAGCAAA ATCATCCTTC CTATGGATTC TTTTCTCAGT GTTTACTTAA TTCTTTTTGC AGTTTGGATT 003920 003921 GGAGTTTCTA GTAATGATAA TTAATGCCAT TTTACATGAT AGCTTCAATG CAGAAATGGT GTGAGCCTGA GTTACAAATG 004000 004001 ACATGACTAG GGATACAAAC TTCGTCTGTA CTAACATCCT ACCAAGCAGA TTGGAAACAA ATACTACTAC CACTAATATT 004080 004081 CTGATGTAAT TAATAACATC TAATAGAAAA ATAGAAACAT CGTGCTTAGC ATGAAACCAT TGCACAATAT AAACCTGCTC 004160 004161 CCAAATGGCA AGGATTTTTG CTACCAATAT TTGTTCTTAA TTCTCCAGTT ATTTTAAGTA AATAAGTTTC ACATCTAACT 004240 004241 ACCTCAGCTA CTGTTGTTTT ATTTAGAAAC ATGAAACCAT GCACTTTGTA ATCAATAAGT CTTTTGTTTA ACATTTCAAA 004320 004321 AGGATATTTG GTGCAAAGCA ATTTTCAAAA ATTTGTACAT GATATACACC ACCCAACCTC AGGAGGTTGT ACTTAATTTT 004400 004401 GTTTGTTTGT TTCTAAGGTT GGTTTTGGGT AAAATCCTCA TTTCCACTCA ACATCAAGAT AAGCTGCTCT ATATTTGCTT 004480 004481 AATTTGCCTT AAACATTTTG TGCTCCTTTC CCTGTTCAAT TTTTTTGTTT TGTTTTAAAT CTATCTCTGA AAAAAAAATG 004560 004561 GAACAGGTGG CAGGTGAACA GCAAATGGAA GAGAATGGAC CAGTAATTTC TCAGTCCCCT GTTGTCAACT ATCTGCATGA 004640 004641 CATTCTGATT GTGCAAAAAT GCCATTCCTG TGCTTCCCCC TCCATTACAG AATAAGGTCC GAGAGACCCC ACGAGTGTGC 004720 004721 GTAGGGAACG GTGTAGACAT TTCCCCCAGT ATGAGCACAG TGCCTGGACC TGAATGATCA TCTTGGCAGT TCTTGTGCTT 004800 004801 TTACTTTGTA AACATTGTAC AAATGTATTT GGAATTTTAT TTGAAATGGA GACTTAAACT AGTTATTAAA TTTGTTTCCT 004880 004881 TCCTGTAAAT ATATATATTC AAATTCCATG TATCCAAACA TCCCTTTAGC GTTCAGATTG TAAGTGTGTC TTTATTCGCG 004960 004961 GGAGGCCACT GTCAGCAGGC AGTGACCCCC AGTGCCCTAG TTTGAAGCAC AGTGTGTGGA GTATTTGATG TACTACAGTA 005040 005041 CCATAGTTAT TTTGGTCTGT TAAGTAAGTT GCAATTTGTG ATGAAATGAA GTGGAAAGTA GTACTTCATA ATGAACAAAT 005120 005121 TTCCTTGGTT ACATGGTTTT TCTTGTAAAA CTTAAAGAAA AAAAAAGAAA ACTTGAAATT TTA |
Predicted Small Protein
Name | NONHSAT126648_smProtein_1652:1870 |
Length | 73 |
Molecular weight | 8185.9267 |
Aromaticity | 0.0972222222222 |
Instability index | 58.7180555556 |
Isoelectric point | 8.61492919922 |
Runs | 11 |
Runs residual | 0.0118613138686 |
Runs probability | 0.0250598191775 |
Amino acid sequence | MISFLMRQLLSSRHSDALYKLAIFLLTKLNFIKCLLKCTQKTCLLLMPEGFACLIPSCIF SECVHDAPVLYS |
Secondary structure | LHHHHHHHHHHLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLEEEELLLEE LLEELLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLHHHHHHHHHHHHHHHH HHLLLLLLLLLL |
PiMo | ooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiTTTTTTTTTTTTTTTT TToooooooooo |