NONHSAT126652
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT126652 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2588 nt |
Genomic location |
chr8-:56651317..56658606 |
Exon number |
3 |
Exons |
56651317..56652777,56656040..56656179,56657620..56658606 |
Genome context |
|
Sequence |
000001 ccaccgcacc tggccAAATT CTTTAATATA TGTGCTTTTC CTTTTTGTCT GTGTGGTTGA GTCTTATAGT TACTTTTCAT 000080
000081 TGATGTTGAG TATTTTAGAT TTAATAGACT CACAAAAAAT TTTACCAATT CCACGACAGC ATCTTGCCAA AACTTGTCAT 000160 000161 TTAAATATAC ATAAATTTCC CTTTGGagcc aggtgcagtg gctcacgcct gtaatcctaa cactttggga aactaaggtt 000240 000241 ggaggattgc ttgaacctgg gaggttgaga ctgcagtgag ccgtgatcac gccactgcaa tccagcctga gccacagagt 000320 000321 gagactctgt cccCAACTCC CCCCGAAAAA TTACCCTTAG AATCCCTGCT TGCAACTTTT CTCCAGTGAG CGTACTATTC 000400 000401 AGTAGCCCAC TAAAGACAAT TCAGTTTACC ACATTCATTT TATTTAGTGA AATTAATGAT TACTGTAATC TCTATTTTGA 000480 000481 GTTTCAAGGT TTTATGTGAA ATGTTAGGAA AACTGGTCAA TGAAATATTA TATATTACCA CTGGAGGGTA GTGTTTCCAA 000560 000561 TTTCTATTTT TACAAATGAT CAAGTTGAAT TTAGTTGATA GACTAATCGT GTGCttttat tttaaaaata ttttattttc 000640 000641 ataatatCAA ACAGGCCCTC AAAAGTTTGC ATAATCACTT TGTGATCCCC TCACGCCCCC ATGCTAATGA ATTTGTACCC 000720 000721 CTTTTCTCTT tctcccatgc caatactaac gagacccgac cctgcttagc ttctgggatc agacgagatt gggcatgttc 000800 000801 agggtggcat ggccatagGT GCCTTTTCTC TTTCTTAAAA AAAAAAAGTT TGCATTAGTT ACTCTAATGG AGACATTGAA 000880 000881 TGGATTAATT TATTTACTTT TTAATTCAAA TTCTCCTTTT CTTTAGCCCA TTATTCCTAT GTTTACACAA AATATTCGAG 000960 000961 AAGGATTTAG ATCACTTGGA GGAACAAGGT TATTTAGGTG GCTTTATGAA AAATTCCGCT ATCCATTTGC TCCAATGTAT 001040 001041 GGAGGTTTTC CAGTGAAGTT ACGGACCTAT TTAGGCGACC CCATTCCGTA TGACCCACAG ATAACAGCGG AAGAATTAGC 001120 001121 TGAAAAGACG AAGAATGCTG TTCAAGCTTT GATTGATAAG CACCAAAGAA TACCAGGAAA CATTATGAGT GCTTTGTTAG 001200 001201 AACGTTTTCA TTGATAACAA AGGGTCAACT AGAAGATGAT TTAGTACATT TATATTAAAT GTTTGTATCT AAGGTACTGT 001280 001281 CTTCTGAATT TTGTAGGTCC TATAATTAGT ATTTTTTAAA AAAATCATGT TAATAAGCAT CTTTCACAGA ATTCGTTTCT 001360 001361 TTAAAATAGT CAATTTTGTT TTTGCAATTG TGTCAAATAC TAACAAATTA CACACCTAGT AATTCAGAAA AAGATGTCTT 001440 001441 ATTTGTAAAT TCCTAACAAT TTATGCTAAA CATATAGATT CTTAAGTTTA TTAATAACAG CAGTTTAGGT TAAACAAACA 001520 001521 TTCCTGGATA ATGCGTTAAA TTTCTGTATC TGTCGCCCTG AGCTGATTTT GAAAGATGGT ATAAGCTAGG GGTTAGTATA 001600 001601 GTTGTTTAAG TTAGAAAAAA CATGCTGTTG tctgcccctc attcccttca tgaccttggg caagtcacgt aatgtttttg 001680 001681 tgcctcaACA ATTCACTTTT TAAAAACATG ATCGTATGAT GAATGATATT ATTTTGTTAT TTATATTTAC TGTGATTGAT 001760 001761 AACTGTTGAA CCaaaataat aaaataatta atttaaaCAA TGTCAAAATC CTTTAGCAGT TATGTATATA TTTTCTCCAT 001840 001841 TGTGTGTTTA AATTATGTCA TGTCCAGTTG CCAAGCACAA TGAAAAAGAT Gtattatttt ttaaattgaa taaaaaatta 001920 001921 ggaaaaataa aatttctaat tattattttt agtatgatat ttttaaCAAG AGTCTATAGG CAAACAATAT AGGGTGTGCT 002000 002001 GTGCATTGTC AGCCCTATAC TGTGGTCTTA ATAATGCCAG CTTAAAAATC ACTGTTGTGC TCTGCATTTC GTGTGTTAGA 002080 002081 AGCTGATTCT AGGCTGAGGA AAGCAAGAGT TCTCTACTTT TGCTCAATAT TGAGGCTTAC CCAGTTTGAC TCTACAGCCA 002160 002161 GTGAAGTGGT TTATTGCTTC AATAAAAATA TACTTGAATG ATGAATTTAT TTATGTTTTG TTTTGTTTTT ATTtagagat 002240 002241 ggggttttgc catgttggcc aggctggtct tgaactcctg acctcaggtg atccacctgc ctcagcctcc caacttgctg 002320 002321 ggattacagg tgtgagccac catgcccagc cTGAATGATG AATTTATGTG AACACAAAGC CCTCTGAAAA ATTAATGATT 002400 002401 TTCAATTTGT TGTCTTCTTG AAAACTGAAT TTAAGTATTA TTTAAACAGA AAAGTGTCAG AAATCAAATG CAGTATCTCC 002480 002481 CTCTCCCTTT TTTAAATGTT GAATTAGTAG GGTTTTTGTA TAGCTTTTTG TATTGTGTGT ATTTATGATA TGTGAAATGT 002560 002561 ACATAAAATT AAACAATGTG AAAATAAA |
Predicted Small Protein
Name | NONHSAT126652_smProtein_938:1213 |
Length | 92 |
Molecular weight | 10664.2253 |
Aromaticity | 0.142857142857 |
Instability index | 53.4802197802 |
Isoelectric point | 9.62567138672 |
Runs | 11 |
Runs residual | 0.0125915750916 |
Runs probability | 0.0439691027926 |
Amino acid sequence | MFTQNIREGFRSLGGTRLFRWLYEKFRYPFAPMYGGFPVKLRTYLGDPIPYDPQITAEEL AEKTKNAVQALIDKHQRIPGNIMSALLERFH |
Secondary structure | LLLHHHHHHHHHLLLLHHHHHHHHHHLLLLLLLLLLLLEEEEEELLLLLLLLLLLLHHHH HHHHHHHHHHHHHHHLLLLHHHHHHHHHHLL |
PRMN | - |
PiMo | - |