NONHSAT126880
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT126880 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2807 nt |
Genomic location |
chr8-:62671653..62678528 |
Exon number |
2 |
Exons |
62671653..62674323,62678450..62678528 |
Genome context |
|
Sequence |
000001 AAAAACAACT TCAACGGCCT TTCCATGCCC AAAGACACTG CAGCAGAGCC GTCTATGAAT GACAGATGAA ATGCCTTAGA 000080
000081 GTCTTAGTTC CAAACCACCT CCCCGGACAG TCGGAAATCC CACTGGCTGG AGGAATAAAT AAATTCCTTA TCTTGTCAAG 000160 000161 GAAGCTCCTC CCAAGCTACA AAAGTTGCAG ACAGCAAAGG GATCAAGTGA CCCCAGAGAT GAAATCTGTG ACTCTCTGGT 000240 000241 GGAGCAACAT GATAGTAATA AACAAAGGTT GAGTGCCTGC TGTATAAAGC AACCTCTGGA GTGCCTGATA TCTACTAACT 000320 000321 CTTTTAGCAC CCACTCGACC CTGTGAGATG CGTATTACTT TATTGTATCT ACCACTGTAA AAAAGAATGA ACCAAGCTAC 000400 000401 AGCAATATTA TGTTGCTTGC CCTGAGTCAC ACAGCTGAGT AAGTCACAGG AGTTTGTGCT CATAATGACT TTGCTATGCT 000480 000481 GATGTTTGAA CCTGGAACCA TTCAGCAACC CTCCAGCTAA TATGGCTCCA TGCTCTACTT CTGGAAAAGC TGAGTTCCTG 000560 000561 CAGCCTTGTC CTACATCACC CAAAAGAGCT GGAAAAGAAT GCAGTGAGTT CCATTCTATT TGTTCCGAGA ATAGGAAAGC 000640 000641 CACATTGAAG CAATATCTTA AAGAGAAATC TATAGTTAGG AGTGATGAAG ATTTGAAACA GATGTCAGCA GAAAGAAAAA 000720 000721 GGGAGAGGCA CCATGATAAT TATACTCAGT GATGCTTTTT AAATGACATA TATTCAGTTA AATATAGGGA GGTTTGCTGC 000800 000801 TAGCCATATG AACAAAGCAC AAGAGAATTC CTGGATCAAG GCAGACTTAA AGAGACATTG AAAAAAAAAC AAAATTCAAA 000880 000881 ATTTTGACCT AGTGCAGGAA GAAGTGCAAG TACAGGGGAA GTGGAGGGAA GGAGTGGGGA GGCTGGCACA GAGATGGCAC 000960 000961 GGGCAGATAC GAGCAGATTG ACTCGCCAGG ACTGTCATTG GGCCACCGCT CTTAGCAGGA ATTTCACCAT TGAATGACCT 001040 001041 AATTATTGTC TTGGGAAAAA CACAAGAGCT CCTGTCCATA ACAGGATAAC AGATGTATTT CAGTGGAGCA CAGAATAGGC 001120 001121 CGGATGGTGA CTAGCAAGAA TAAAAGCCCA AGTGGACTGA AGAATCCATC CAAGATATGG TCAGGACGGG CTTGTGGAAA 001200 001201 ACTTGTGCAA TAATGAGAGA AATGTTATCT GTCACTACCT TTTTTAGGCA GCTGTGTGGA TAAACCTACT TTGGGGTAGG 001280 001281 AGCTGAGCCT CAGGCCTGTG ACCGCTAGAA GCCAGACTTG AAGCCAGGAA AGAGGCCGCT CTTCCCAGGA GTTGGGAGAA 001360 001361 TTTGACTTTG GTGTAGAATC CAGAAGGCGG GAGAGAGGGT TCCAGGGAGG AGCTGGGGGT GGAGGCTAAA AAAGGAGCCC 001440 001441 TGGTTGCCAA AGCCAGGAGG TGACTTTACA GGAGAGCAGC AGTGACTAAG CCAGGAAGTG ACTTTGCGGG AGAGCAGCAG 001520 001521 TGACTAATTC AGGAGGTGAC TTTGCGGAAG AGCAGCAGTG ACTAAGCCAG GAGGTGACTT TGCGGGAAAG CTGCAGTGAT 001600 001601 TGTGAAGTTG TTCACATACA GGGGGTCATG GGACACCCTC TACGATCTCC CGTGGGAAAT CCTCAGTAAG CACTCTCACT 001680 001681 CTAGCAATAA GCACTCTCAC TCTAGAAAGC CCTTTTGGTG CTTCCAGTCA CATTGCCTGG CCCACGCTCG GTGAGAGCTC 001760 001761 ACATGCGCTT CTGGTCCTGG CCTTCTCAGA CGCCACAGTA GCTGCCCACC CTGCAAAAGA CCTGGAAGGG GAGGGGAGCC 001840 001841 TGTGCCACAG CAGCCAGAGG ATGAATGTCA TGTCATGAAC AATTCCTGGG GGCACTATGT ACATTTTGTA GAAGTCCTGC 001920 001921 CAGAATGGAA CCTTGCTGTC TACAGCAGCG ACCTTGATAA CACATCATTT GATTTTTCCT CCTTTTGTGA CTCATGCTTC 002000 002001 TGCTACCTCA CCCTGGCTTC CTGAGATCAC CTCCCAGATG AACTCCCTGC ACTGAATTCT GGTCTCAGTT TGCTTTGGGG 002080 002081 AGAACTCAAA ACTAAGACAT TCACCACTGT GTTTGTGTGA GCCAAATCTT CACATCATGA GCAGGCGCTA TGTCTGCGTT 002160 002161 CAGCCAGACA AACAGCAAAC CAGCAACTGC CCACATGAAT ACAGTCCATG GACAAGAGGA GAGTGATAGC TGAGCGACTT 002240 002241 TGGGACTTGC TGTCAAAGAT ACCTGTCTCC CTCTCTTTCA TTCTCTTTAC CTTTCCATCA GACTATGTGG CTGCCTCATT 002320 002321 CCCCCGTGTC CTGCAAGCAA GGATATTAAC TATACAAACA GTCCAGCTTA AAACAAAATG GGCAGAATAT TTGAATAGAC 002400 002401 ACTTCACAAA GGAAGACAAA CAAATTACCA ATAAGTGTGT TAACAATTCT TAACATCGTT AGTCATCAGG GAAGTGGAAA 002480 002481 TTAATACCAC AAGGAGAAAT CACTACACAC TAAAGTGGCT AAAATGAAAA AGAGTAATGA CATCAAATTC TAATCTGAGT 002560 002561 ATAGAGCAAC TGTTGATGGA AATATAAGAT GGTACAGCCA CTTTGGATAT AATAAAATGA TGCAACCACT TTGGAAAAGT 002640 002641 TTGGCAGCTT TATGTAAAAC TAAGCAAATA CCTTTGGCCC AGCAATTCCA CTCAAGCAAT CCTTCCCTAA AGAAATAAAA 002720 002721 ATATATATCC GCCAAAAGAT TTGTAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA GAAAAAAAAA 002800 002801 AAAAAAA |
Predicted Small Protein
Name | NONHSAT126880_smProtein_2207:2452 |
Length | 82 |
Molecular weight | 9543.0401 |
Aromaticity | 0.111111111111 |
Instability index | 42.9074074074 |
Isoelectric point | 9.91497802734 |
Runs | 11 |
Runs residual | 0.00637723816532 |
Runs probability | 0.0185078126255 |
Amino acid sequence | MDKRRVIAERLWDLLSKIPVSLSFILFTFPSDYVAASFPRVLQARILTIQTVQLKTKWAE YLNRHFTKEDKQITNKCVNNS |
Secondary structure | LLHHHHHHHHHHHHHHLLLLEEEEEEEELLLHHHHLLLHHHHHHHHHHHHHHHHHHHHHH HHHHHLLHHHHHHHHHHLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooooooooooooooo ooooooooooooooooooooo |